biomaRt has encountered an unknown server error
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Grace_H • 0
@5f449e2c
Last seen 23 months ago
United States

Keep getting server error even with different mirrors. Does anyone know how to get around this error?


Convert_MouseGeneList_To_Human_genesymbols <- function(x)
{
 human <- useEnsembl("ensembl", "hsapiens_gene_ensembl", mirror = "uswest", verbose = FALSE)
  mouse <- useEnsembl("ensembl", "mmusculus_gene_ensembl", mirror = "uswest", verbose = FALSE)

  genesV2 <- getLDS(attributes=c("mgi_symbol"), filters = "mgi_symbol", values = x, mart = mouse, attributesL = c("hgnc_symbol"), martL = human, uniqueRows=T)

  mousex <- genesV2[which(duplicated(genesV2[,1])==FALSE),]

  return(mousex)
}

 mygeneshuman <- Convert_MouseGeneList_To_Human_genesymbols(mygenes)

Error: biomaRt has encountered an unknown server error. HTTP error code: 502
Please report this on the Bioconductor support site at https://support.bioconductor.org/
Consider trying one of the Ensembl mirrors (for more details look at ?useEnsembl)
biomaRt • 746 views
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