biomaRt has encountered an unknown server error
0
0
Entering edit mode
Grace_H • 0
@5f449e2c
Last seen 20 months ago
United States

Keep getting server error even with different mirrors. Does anyone know how to get around this error?


Convert_MouseGeneList_To_Human_genesymbols <- function(x)
{
 human <- useEnsembl("ensembl", "hsapiens_gene_ensembl", mirror = "uswest", verbose = FALSE)
  mouse <- useEnsembl("ensembl", "mmusculus_gene_ensembl", mirror = "uswest", verbose = FALSE)

  genesV2 <- getLDS(attributes=c("mgi_symbol"), filters = "mgi_symbol", values = x, mart = mouse, attributesL = c("hgnc_symbol"), martL = human, uniqueRows=T)

  mousex <- genesV2[which(duplicated(genesV2[,1])==FALSE),]

  return(mousex)
}

 mygeneshuman <- Convert_MouseGeneList_To_Human_genesymbols(mygenes)

Error: biomaRt has encountered an unknown server error. HTTP error code: 502
Please report this on the Bioconductor support site at https://support.bioconductor.org/
Consider trying one of the Ensembl mirrors (for more details look at ?useEnsembl)
biomaRt • 689 views
ADD COMMENT

Login before adding your answer.

Traffic: 898 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6