Hello! I know this is a post closely related with others posted here. However, I have not been able to fix this issue with that information. I am running RStudio with R 4.2.1 in windows10 and I am trying to install the DEseq2 package using the recommended commands:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DESeq2")
All commands run well, however, at the end of the installation the next problem related with GenomeInfoDbData pops up:
The downloaded binary packages are in C:\Users\joser\AppData\Local\Temp\Rtmpw7QBW1\downloaded_packages installing the source package ‘GenomeInfoDbData’ trying URL 'https://bioconductor.org/packages/3.15/data/annotation/src/contrib/GenomeInfoDbData_1.2.8.tar.gz' Content type 'application/x-gzip' length 11512907 bytes (11.0 MB) downloaded 11.0 MB The downloaded source packages are in ‘C:\Users\joser\AppData\Local\Temp\Rtmpw7QBW1\downloaded_packages’ Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.2.1/library packages: nlme Warning message: In install.packages(...) : installation of package ‘GenomeInfoDbData’ had non-zero exit status
I have tried to solve this problem in different ways (re-installing R and Rstudio several times and removing old files, installing GenomeInfoDbData alone using BiocManager and from source, with and without admin permissions...) but all failed and all finally reported "installation of package ‘GenomeInfoDbData’ had non-zero exit status". Do you have any clue about what could be going on here?