Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RStudio
•
reset
3
votes
4
replies
141
views
DESeq2::plotPCA plotting error
RStudio
PCA
DESeq2
updated 18 days ago by
swbarnes2
★ 1.0k • written 19 days ago by
960942
• 0
0
votes
0
replies
126
views
function GDCquery_Maf error
rstudio
maftools
5 weeks ago
misslubblys
• 0
8
votes
9
replies
706
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 3 months ago by
Hervé Pagès
15k • written 3 months ago by
jon.klonowski
▴ 30
0
votes
3
replies
309
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 12 weeks ago by
Sean Davis
21k • written 3 months ago by
nabiyogesh
▴ 10
0
votes
0
replies
128
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
6 months ago
HELEN
• 0
0
votes
1
reply
183
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 6 months ago by
James W. MacDonald
59k • written 6 months ago by
HELEN
• 0
0
votes
0
replies
149
views
TFBSTools- analysis for trascriprion factors
TFBSTools
RStudio
R
7 months ago
HELEN
• 0
1
vote
5
replies
600
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2
RStudio
7 months ago
Sonia
• 0
0
votes
1
reply
1.1k
views
Unable to Install packages in R
rstudio
updated 8 months ago by
James W. MacDonald
59k • written 8 months ago by
Fiona
• 0
0
votes
4
replies
705
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
8 months ago
HELEN
• 0
5
votes
15
replies
3.2k
views
Can't able to install Seurat in Rstudio
Rstudio
Seurat
updated 11 months ago by
Kevin Blighe
3.5k • written 11 months ago by
KOUSTAV
• 0
1
vote
7
replies
748
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
13 months ago • updated 12 months ago
Abby
▴ 10
0
votes
1
reply
264
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 15 months ago by
Erik Wright
▴ 150 • written 15 months ago by
noeliaruizalonso23
• 0
1
vote
5
replies
1.0k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 17 months ago by
Michael Lawrence
11k • written 17 months ago by
Søren
• 0
0
votes
1
reply
287
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 2.2 years ago by
shepherl
3.1k • written 2.2 years ago by
bwiley4
• 0
0
votes
5
replies
553
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 2.5 years ago by
altuna akalin
▴ 20 • written 2.5 years ago by
hwaterma
• 0
2
votes
1
reply
1.8k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 2.6 years ago by
Martin Morgan
25k • written 2.6 years ago by
mcall
▴ 20
0
votes
5
replies
738
views
Using RStudio AMI with localhost
RStudio
AWS
AMI
2.8 years ago
bio-explorer
• 0
3
votes
6
replies
1.0k
views
Integer overflow issue with ChIPQC
ChIPQC
Rstudio
updated 2.8 years ago by
Martin Morgan
25k • written 2.8 years ago by
Nitesh Kumar Singh
▴ 30
1
vote
8
replies
1.9k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2
null
summarizedexperiment
rstudio
updated 2.9 years ago by
Martin Morgan
25k • written 2.9 years ago by
200dumplings
• 0
0
votes
0
replies
1.2k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error
ballgown
rstudio
R
stattest
3.1 years ago
fatimarasool135
• 0
2
votes
3
replies
611
views
make TxDb from list of genes
R
maketxdbfrombiomart
maketxdbfromgranges
rstudio
ensembl
3.4 years ago
rtwest
• 0
0
votes
4
replies
924
views
New computer won't install DESeq2
deseq2
rstudio
install error
updated 3.6 years ago by
Michael Love
36k • written 3.6 years ago by
jyoung
• 0
2
votes
2
replies
2.3k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio
heatmap.2
updated 3.8 years ago by
James W. MacDonald
59k • written 3.8 years ago by
austin.taylor
• 0
0
votes
1
reply
587
views
Install Bioconductor package locally/temporarily
R
rstudio
package installation
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
ariel
▴ 10
0
votes
1
reply
1.3k
views
DeSeq2 installation on ubuntu fails
deseq2
R
ubuntu
bioconductor
rstudio
updated 3.8 years ago by
Michael Love
36k • written 3.8 years ago by
drumarsohail
• 0
0
votes
0
replies
621
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli
rstudio
3.9 years ago
arphatak
• 0
1
vote
4
replies
1.1k
views
biomaRt scan error for latest assembly when indicating version Number
biomart
rstudio
ensembl mart
updated 4.2 years ago by
Mike Smith
★ 5.5k • written 4.2 years ago by
mullpaul
• 0
2
votes
4
replies
677
views
R session terminates when trying to load affycoretools package
affycoretools
Rstudio
fatal error
updated 4.2 years ago by
James W. MacDonald
59k • written 4.2 years ago by
biostR
▴ 10
0
votes
2
replies
2.2k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
4.5 years ago
clarisbaby
• 0
1
vote
2
replies
783
views
Rstudio session aborts when using read.celfiles()
oligo package
Rstudio
fatal error
microarray
CEL
4.5 years ago
biostR
▴ 10
0
votes
0
replies
845
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
4.7 years ago
Luiz
• 0
0
votes
1
reply
1.5k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor
rstudio
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
yog312
• 0
1
vote
1
reply
3.8k
views
MA plot in R
rstudio
r
plotMA
4.9 years ago
g.k
• 0
0
votes
3
replies
1.7k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio
cummerbund
error
4.9 years ago
mszskb
• 0
0
votes
4
replies
879
views
problem in installing flowclust
rstudio
flowclust
updated 4.9 years ago by
shepherl
3.1k • written 5.0 years ago by
shadhiksk
• 0
0
votes
1
reply
612
views
can a function outliers be applied for a flowframe?
bioconductor
flow cytometry
rstudio
updated 4.9 years ago by
SamGG
▴ 270 • written 5.0 years ago by
shadhiksk
• 0
2
votes
4
replies
913
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error
diffbind
rstudio
abort
quit
updated 5.0 years ago by
Gord Brown
▴ 640 • written 5.0 years ago by
msabbag2
• 0
0
votes
0
replies
660
views
Rstudio crashes when running monocole
monocole
single-cell
rstudio
5.0 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
722
views
Problem with cummeRbund
rstudio
cummerbund
5.2 years ago
sanathoi.guru
• 0
2
votes
1
reply
3.1k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
Riot
• 0
3
votes
3
replies
13k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
5.6 years ago
Jon Bråte
▴ 180
0
votes
4
replies
1.8k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 5.8 years ago by
mfox
• 0 • written 5.8 years ago by
anjali.krishna1008
• 0
0
votes
0
replies
1.4k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
5.9 years ago
pleaseteachmehowtodoit
• 0
0
votes
2
replies
1.3k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation
variantannotation
rstudio
updated 6.2 years ago by
Valerie Obenchain
★ 6.7k • written 6.2 years ago by
noor.suaini
• 0
0
votes
1
reply
804
views
What preprocessing needs to be done on the Experiment datasets
colon
rstudio
golubesets
updated 6.2 years ago by
James W. MacDonald
59k • written 6.2 years ago by
shramanathakur
• 0
0
votes
2
replies
739
views
Error viewing the data set Golub_Merge
golubEsets
rstudio
updated 6.2 years ago by
James W. MacDonald
59k • written 6.2 years ago by
shramanathakur
• 0
1
vote
3
replies
20k
views
Converting first column to rownames
rstudio
6.2 years ago
John
▴ 30
0
votes
5
replies
2.2k
views
New Version of CummeRbund?
cummerbund
rstudio
6.3 years ago
lreiter
• 0
3
votes
8
replies
19k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
6.5 years ago
svlachavas
▴ 780
50 results • Page
1 of 1
Recent ...
Replies
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
chrarnold
• 0
Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
Rory Stark
★ 4.4k
The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gemma
• 0
Both strategies actually lead to the same results. Resolved, thanks!
Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor
by
Laurent Gatto
1.5k
Yes, indeed, if you have local files, you can provide their full path as input to the `openMSfile()` function. This is also what happens in…
Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor
by
gianluigi.caltabiano
• 0
Hello, I have the same exact problem. I am doing a tutorial about Quantitative Proteomics using rpx to import data an PXDataset keep givin…
Votes
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: Variance explained (coefficient of determination) in edgeR
Comment: cellCounts() function floating point error
Awards
• All
Scholar
to
jared.andrews07
▴ 30
Scholar
to
vanbelj
▴ 10
Scholar
to
James W. MacDonald
59k
Popular Question
to
Johannes Rainer
★ 1.9k
Popular Question
to
Gordon Smyth
45k
Locations
• All
United States,
1 minute ago
United States,
3 minutes ago
The city by the bay,
8 minutes ago
Germany,
15 minutes ago
United States,
20 minutes ago
Traffic: 737 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6