how to identify the unwanted variables independent of phenotypes
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Tongjun • 0
@tongjun-24234
Last seen 8 weeks ago
United States

I have been working on a large scale RNA-seq data analysis that are generated over 5 years. We don't have control genes and our phenotypes are continuous variables. We are trying to find the unwanted variables without depending on any phenotypes or control samples/genes. We have tried clustering/PCA. The clusters were not clear to us. Welcome any suggestions! Thank you very much!

Tongjun

RUVSeq svaseq • 117 views
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Is it possible for RUVSeq to use 6 control samples to estimate the unwanted variables for more than 1K samples? Thanks!

Tongjun

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