Biostar Svaseq

Showing : svaseq • reset

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RNASeq sva svaseq

updated 4 days ago by James W. MacDonald 58k • written 4 days ago by Bex • 0

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159

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limma sva Leafcutter SVAseq

3 months ago georgia.katsoula ▴ 20

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207

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sva svaseq surrogate variable analysis

updated 21 months ago by James W. MacDonald 58k • written 21 months ago by Mozart ▴ 20

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379

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svaseq sva

2.8 years ago flippy23 • 0

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429

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MEDIPS svaseq sva

updated 3.0 years ago by Lukas Chavez ▴ 570 • written 3.0 years ago by tofukaj • 0

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482

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deseq2 svaseq

3.0 years ago bioinfo • 0

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795

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edger sva svaseq limma

updated 3.7 years ago by Ryan C. Thompson 7.7k • written 3.7 years ago by cats_dogs ▴ 20

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1.7k

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DESeq2 sva svaseq batch effect correction

4.0 years ago L_K • 0

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618

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svaseq batcheffectcorrection

4.2 years ago burcu.atasu • 0

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815

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ruvseq svaseq edaseq

updated 4.2 years ago by davide risso ▴ 870 • written 4.2 years ago by llo ▴ 10

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799

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sva svaseq batch effect batch effects batch effect correction

4.4 years ago vedran.franke • 0

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1.1k

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deseq2 svaseq

updated 4.5 years ago by Michael Love 35k • written 4.5 years ago by gpalidwor ▴ 10

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1.0k

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sva svaseq

updated 4.6 years ago by Guido Hooiveld ★ 3.2k • written 4.6 years ago by wamiqsaifi • 0

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1.9k

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limma sva svaseq

updated 4.9 years ago by Aaron Lun ★ 27k • written 4.9 years ago by Bogdan ▴ 620

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1.1k

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svaseq dexseq

updated 5.0 years ago by Alejandro Reyes ★ 1.8k • written 5.0 years ago by tofukaj • 0

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1.1k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 5.3 years ago by Jakub ▴ 50 • written 5.3 years ago by amoltej ▴ 10

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3.3k

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deseq2 svaseq

5.3 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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1.1k

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deseq2 sva svaseq

updated 5.4 years ago by Michael Love 35k • written 5.4 years ago by szenitha • 0

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1.5k

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sva svaseq batcheffectcorrection

updated 5.5 years ago by Jeff Leek ▴ 610 • written 5.5 years ago by szenitha • 0

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2.5k

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deseq2 sva svaseq pca

5.6 years ago Peter Alto ▴ 10

20 results • Page 1 of 1

Recent ...

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Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by tjhwangxiong • 0

``` https://drive.google.com/drive/folders/1787thVatZpt_KFrfXY-aXV1m0FRm8Mhm?usp=sharing ``` Thanks for your reply. I have uploaded the fil…

Comment: Trying to follow a gene set analyisis in R by Michael Love 35k

No I can’t help with exercises. Just to be clear I’m not affiliated with Harvard and have no supported effort in relation to the edx classe…

Answer: Problems to find the pvalues via rowttests by Gordon Smyth 44k

Ordinary t-tests aren't recommended for genomic analyses because they have poor power and higher false discovery rates. Using the limma p…

Answer: How to insert a qvalues column in a dataframe with pvalues in R by Gordon Smyth 44k

Here and in a previous post, it seems you're not using recommended Bioconductor workflows for Affymetrix microarrays. If you used a standar…

Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0

Thank you. I hope I can still let you know if I have issues with your exercises. They are very challenging but useful! :)

Votes

Answer: Problems to find the pvalues via rowttests

A: How to use subSeq with DNAStringSet and information of GroupedIRanges?

Annotating GRanges with TxDb gene models using plyranges

plyranges select() when a metadata column is shared with core variable

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