Normalization RNA-seq data maSigPro
0
0
Entering edit mode
@da305ac9
Last seen 24 days ago
Netherlands

Hi,

I want to do an analysis of RNA-seq data over a time course using maSigPro. I use a dataset from Geo Genbank where the data is given as CPM.

It says that data must be normalized before the application of maSigPro as it is not integrated any normalized method, but it does not specify what can of normalization. Can I use the CPM normalized counts for maSigPro analysis?

Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output
# please also include the results of running the following in an R session

sessionInfo( )

maSigPro • 88 views