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maSigPro
•
reset
0
votes
1
reply
232
views
t.fit stops in masigpro while running RNA seq data
RNASeqData
maSigPro
12 months ago
subashika
• 0
0
votes
1
reply
288
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
updated 17 months ago by
Mª José Nueda
▴ 90 • written 17 months ago by
Itzel
• 0
0
votes
2
replies
546
views
maSigPro see.genes function gives "invalid 'times' argument" error for single time course data
masigpro
23 months ago • updated 16 months ago
daw277
• 0
0
votes
1
reply
239
views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
updated 11 weeks ago by
cgroot
• 0 • written 21 months ago by
Olof.rundquist
• 0
0
votes
2
replies
276
views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
updated 23 months ago by
Michael Love
36k • written 23 months ago by
DcL-A
• 0
0
votes
2
replies
243
views
MaSigPro Single Series Analysis
maSigPro
2.2 years ago
dorothy.mitchell
• 0
0
votes
1
reply
727
views
glm.fit problem with maSigPro
software error
maSigPro
Nueda
RNAseq
updated 3.3 years ago by
James W. MacDonald
59k • written 3.3 years ago by
lalamig
• 0
1
vote
3
replies
466
views
masigpro: could not find function "negative.binomial"
masigpro
3.5 years ago
nicolas.descostes
▴ 20
0
votes
6
replies
1.1k
views
[maSigPro] two color array analysis of time series in different cell lines.???
limma
maSigPro
limma
maSigPro
updated 3.7 years ago by
sbbinfo90
• 0 • written 8.6 years ago by
neeraj rana
▴ 60
0
votes
5
replies
4.2k
views
masigpro Error in terms.formula(formula, data = data) : '.' in formula and no 'data' argument
masigpro
updated 4.2 years ago by
naets_matthias
• 0 • written 6.9 years ago by
john
▴ 110
0
votes
1
reply
918
views
maSigPro: error using see.genes()
masigpro
updated 4.2 years ago by
therealsisterdot
• 0 • written 5.0 years ago by
valentine.murigneux
• 0
3
votes
5
replies
1.1k
views
MasigPro and estimation of theta for negative binomial law
R
masigpro
edgr
rnaseq
negative binomial model
4.3 years ago
nicolas.hipp
▴ 20
3
votes
7
replies
3.1k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
4.4 years ago
dacaba.92
▴ 10
0
votes
0
replies
636
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
4.4 years ago
jelisaveta.jeki.djordjevic
• 0
0
votes
0
replies
525
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
4.6 years ago
veersingh.marwah
• 0
0
votes
0
replies
577
views
Iso-maSigPro errors in IsoModel and PodiumChange
masigpro
4.6 years ago
xin.zhou
• 0
0
votes
1
reply
543
views
Are significant genes ordered in maSigPro?
masigpro
rnaseq
updated 5.0 years ago by
James W. MacDonald
59k • written 5.0 years ago by
itspilipineiro
• 0
0
votes
0
replies
5.6k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro
error
PlotGroups
5.0 years ago
nicolas.descostes
▴ 20
0
votes
0
replies
562
views
Block design for maSigPro
masigpro
timecourse
5.8 years ago
sanj
▴ 20
0
votes
2
replies
1.3k
views
maSigPro genes from clusters
masigpro
clustering
updated 5.8 years ago by
Mª José Nueda
▴ 90 • written 5.9 years ago by
ls299
• 0
0
votes
0
replies
548
views
maSigPro groups comparisons
masigpro
5.8 years ago
ls299
• 0
0
votes
1
reply
893
views
maSigPro edesign and error message
masigpro
6.1 years ago
simonjean434
▴ 10
0
votes
0
replies
648
views
MaSigPro - pre-filtering of genes
MaSigPro
6.2 years ago
GFM
▴ 20
0
votes
1
reply
1.2k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 6.2 years ago by
efejiroe
• 0 • written 6.8 years ago by
dimitri.leonid.lindenwald
▴ 50
0
votes
1
reply
2.3k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 6.6 years ago by
Mª José Nueda
▴ 90 • written 8.3 years ago by
Guest User
★ 12k
0
votes
2
replies
725
views
row with zeros
maSigPro
min.obs
p.vector
updated 6.6 years ago by
Mª José Nueda
▴ 90 • written 6.6 years ago by
gmdc
• 0
0
votes
1
reply
788
views
Paralelization of maSigPro
maSigPro
parallel
6.6 years ago
gmdc
• 0
0
votes
1
reply
1.1k
views
RNASeq time-course analysis with maSigPro: T.fit error when assessing multiple groups
rnaseq
masigpro
timecourse
7.1 years ago
Ryan Goosen
• 0
0
votes
1
reply
618
views
maSigPro dataset information
maSigPro
maSigPro
8.6 years ago
Guest User
★ 12k
0
votes
3
replies
961
views
maSigPro and "vars" argument
maSigPro
maSigPro
updated 10.7 years ago by
Mª José Nueda
▴ 90 • written 10.7 years ago by
Andrea Grilli
▴ 240
0
votes
1
reply
1.3k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
updated 11.0 years ago by
Andrea Grilli
▴ 240 • written 11.0 years ago by
Valerie Obenchain
★ 6.7k
0
votes
0
replies
863
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
11.0 years ago
Andrea Grilli
▴ 240
0
votes
0
replies
899
views
[maSigPro] Splitting data - how?
maSigPro
maSigPro
11.0 years ago
Valerie Obenchain
★ 6.7k
0
votes
1
reply
866
views
Paired Data in maSigPro
maSigPro
maSigPro
11.4 years ago
Mike Walter
▴ 230
0
votes
3
replies
873
views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro
maSigPro
updated 11.5 years ago by
Mª José Nueda
▴ 90 • written 11.5 years ago by
Maciej Jończyk
▴ 720
0
votes
1
reply
810
views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
updated 11.6 years ago by
avehna
▴ 240 • written 11.6 years ago by
Maciej Jończyk
▴ 720
0
votes
1
reply
1.1k
views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
updated 12.0 years ago by
Wolfgang Huber
13k • written 12.0 years ago by
Matthias Boeck
▴ 10
0
votes
1
reply
1.3k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
updated 12.1 years ago by
Mª José Nueda
▴ 90 • written 12.1 years ago by
Maciej Jończyk
▴ 720
0
votes
3
replies
911
views
[maSigPro] How to analyze 2-colour microarrays?
Normalization
limma
maSigPro
Normalization
limma
maSigPro
updated 12.1 years ago by
Mª José Nueda
▴ 90 • written 12.1 years ago by
Maciej Jończyk
▴ 720
0
votes
1
reply
870
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 12.5 years ago by
jeremy wilson
▴ 150 • written 12.5 years ago by
Ana Conesa
▴ 340
0
votes
0
replies
774
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
12.5 years ago
jeremy wilson
▴ 150
0
votes
1
reply
884
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
12.5 years ago
lohith madireddy
▴ 40
0
votes
2
replies
841
views
question about p-values in maSigPro
affy
maSigPro
affy
maSigPro
12.8 years ago
Dick Beyer
★ 1.4k
0
votes
3
replies
859
views
maSigPro and EMV no longer available for windows.
maSigPro
maSigPro
updated 13.0 years ago by
Ana Conesa
▴ 340 • written 13.0 years ago by
Giulio Di Giovanni
▴ 540
0
votes
0
replies
955
views
maSigPro time problem (2.trial)
maSigPro
maSigPro
13.0 years ago
Klaus-Peter Pleissner
▴ 70
0
votes
1
reply
819
views
MaSigPro
maSigPro
maSigPro
updated 14.6 years ago by
Mª José Nueda
▴ 90 • written 14.6 years ago by
Narinder Singh Sahni
▴ 50
0
votes
2
replies
666
views
Time course cDNA two color array analysis
TimeCourse
limma
timecourse
maSigPro
TimeCourse
limma
timecourse
maSigPro
15.3 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
771
views
microarray analysis of a dose response * strain experiment
Microarray
affy
limma
maSigPro
DOSE
BRAIN
Microarray
affy
limma
maSigPro
DOSE
BRAIN
15.5 years ago
Naomi Altman
★ 6.0k
48 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
karenserrano
• 0
Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen
Answer: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★ 3.2k
Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
ksong
• 0
Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…
Comment: cellCounts() function floating point error
by
Wei Shi
★ 3.3k
Yes we are currently working on generating a small example for cellCounts.
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
by
ksong
• 0
Hi Dr Sudbery, yes I found looking at the coverage in IGV helps a lot. I did find some differences between CDS and UTR and between samples.…
Votes
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
Answer: Handling NA values in limma's voom design matrix
Answer: Handling NA values in limma's voom design matrix
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