Cannot install package "clusterProfiler" by BiocManager::install()
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Entering edit mode
xqhuqd • 0
@f8b05d59
Last seen 18 months ago
United States

Hi All,

I am having troubles installing the "clusterProfiler" package, I get the error:

Any ideas on how to install the package? Thanks for any help.



BiocManager::install("clusterProfiler")
if (!require("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
BiocManager::install("org.Mm.eg.db")




BiocManager::install("clusterProfiler")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt)
Warning message:
package(s) not installed when version(s) same as current; use `force = TRUE` to
  re-install: 'clusterProfiler' 
> if (!require("BiocManager", quietly = TRUE))
+   install.packages("BiocManager")
> BiocManager::install("org.Mm.eg.db")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt)
Warning message:
package(s) not installed when version(s) same as current; use `force = TRUE` to
  re-install: 'org.Mm.eg.db'
clusterProfiler BiocManager • 2.8k views
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Entering edit mode
shepherl 3.8k
@lshep
Last seen 9 hours ago
United States

There is no ERROR here. The message indicates you already have clusterProfiler installed. You should be able to use library(clusterProfiler)

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