HOMER error: Where is the file?
1
0
Entering edit mode
兆豪 • 0
@8f1875ba
Last seen 2.1 years ago
Hong Kong

Hello, everyone. I have got the bed file of peak calling of chip-seq

When I use HOMER for the analysis, the following situation happens.

I search in Google but found nothing like it.Hope to get help here

Here is my code

findMotifsGenome.pl /home/huang/chip/ASpeakcalling/AS_summits.bed hg38 /home/huang/chip/ASpeakcalling/homer_result/ -size 200

and I got : where is the file?

I also tried the code under ./homer/bin/ and also got :where is the file?

enter image description here

HOMER chip-seq • 1.7k views
ADD COMMENT
0
Entering edit mode
兆豪 • 0
@8f1875ba
Last seen 2.1 years ago
Hong Kong

I fixed the problem after reinstalling the HOMER

ADD COMMENT
0
Entering edit mode

Please note that Homer is not a Bioconductor package. For the future, non-Bioc questions were better suited for biostars.org or a bioinformatics-focused Reddit channel.

ADD REPLY

Login before adding your answer.

Traffic: 827 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6