Gene enrichment analysis
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Eliza • 0
@1956e1f6
Last seen 17 months ago
Israel

Hi,
Sorry in advance if the question is too "newbie " : I have 3 data sets :

  1. 8000 genes
  2. From this 8000 i have 200 that were found significant for a specific disease im analyzing .
  3. Another data set with genes associated with another disease . I want to preform gene enrichment analysis with this 3 data frames and as I understand a test that uses hyper geometric distribution is appropriate here.
    I tried to use GofuncR but it doesn't have the option to use 3 data sets . Is there any other package that can preform this type of analysis .  Thanks
analysis R GOfuncR • 735 views
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You could perform the enrichment test pairwise and then select those that are enriched in all the comparisons.

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