I run a VCF file of somatic variations in SigProfilerMatrixGenerator (It gives mutational signatures) I got the output with three different substitutions (SBS, DBS, Indels) The output files have list of base substitutions matrix For instance, The SBS6 output looks like these C>A 1559 C>G 2148 C>T 7366 T>A 1140 T>C 8198 T>G 1830

My concern is, along with the position i want the gene names so is it possible to get the gene names from SigProfilerMatrixGenerator output ? and if not that whats the other way to get the gene names from VCF files ?

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