Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
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blessybo • 0
@99675062
Last seen 5 months ago
United States

I am performing ATAC seq analysis in R v4.2 and am trying to create a set of TSS positions from the gene models in the TxDb.Hsapiens.UCSC.hg19.knownGene package. For that, I am trying to install the package "TxDb.Hsapiens.UCSC.hg19.knownGene" using BiocManager. But the documentation only provides installation script for R v4.3. I tried to install it using BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene", version = "3.16"), where 3.16 being the version of Bioconductor for R version 4.2. But it fails with many errors and displays there is no such package. Any idea how to solve this? Thank you!

Bioconductor BiocPkgTools • 539 views
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You need to show the errors rather than simply saying you got some.

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I have attached the images below

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