plotAvgProf - How to change labels in the facet option
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inna.gur • 0
@9688cd82
Last seen 7 days ago
Israel

Hi

I have trouble with replacing the labels in the plotAvgProf function in R while using Chipseeker.

plotAvgProf(tagMatrixList, xlim=c(-3000, 3000), conf=0.95,resample=500, facet="row")
  1. How do I change the labels from "Peak1,,,Peak2..." to my sample names

Thanks

ChIPseeker • 112 views
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@james-w-macdonald-5106
Last seen 1 day ago
United States

Change the names of your tagMatrixList

> library(ChIPseeker)
> data("tagMatrixList")
> names(tagMatrixList)
[1] "ARmo_0M"    "ARmo_1nM"  
[3] "ARmo_100nM" "CBX6_BF"   
[5] "CBX7_BF" 

> names(tagMatrixList) <- c("These","names","have","been","changed")
> plotAvgProf(tagMatrixList, xlim=c(-3000, 3000), conf=0.95,resample=500, facet="row")

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