Showing : ChIPseeker • reset
1
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what does " * " denote under the strand column of the GRanges object file output
ChIPseeker
12 weeks ago Meghna • 0
0
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0
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93
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CHIPseeker- promoter gene names
ChIPseeker CHIPsee
3 months ago rb • 0
0
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1
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177
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ChIPseeker: Annotating Peaks with both upstream and downstream gene
ChIPseeker
updated 5 months ago by ▴ 10 • written 5 months ago by • 0
0
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0
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114
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What is the definition of flank_gene_distances output field in ChIPseeker
ChIPseeker
5 months ago Sam ▴ 10
0
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0
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141
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Annotation of downstream in ChIPseeker
downstream Priority ChIPseeker
5 months ago Xiaojie Cheng • 0
0
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2
replies
291
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ChIPseeker failing on r-devel on CRAN checks
ChIPseeker cinaR
6 months ago • updated 5 months ago Onur Karakaslar • 0
1
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4
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297
views
Genome annotation file in TxDb.Mmusculus.UCSC.mm10.knownGene
ChIPseeker TxDb.Mmusculus.UCSC.mm10.knownGene
6 months ago Kasit • 0
0
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0
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117
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ChIPSeeker covplot function, fix yaxis
ChIPseeker
7 months ago jordi.planells • 0
0
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0
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145
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Genes in ChIPseeker annotation do not exist in the organism
ChIPseeker
9 months ago Sam ▴ 10
0
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2
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669
views
ChIP seeker annotation error
DiffBind chipseq ChIPseeker ChipDb annotation
10 months ago • updated 7 months ago Mar Mar • 0
5
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3
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234
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importing BED with non-integer values
ChIPseeker ChIPSeqData
updated 10 months ago by 58k • written 10 months ago by • 0
0
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0
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116
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Regarding hiding or removing the vertical line at center (at zero coordinate) average profile in Chipseeker
ChIPseeker
10 months ago Prasoon • 0
0
votes
1
reply
191
views
How to use peak summits instead of TSS or transcript to plot heatmap for other factors
ChIPseqR ChIPs ChIPseeker ChIPSeq chipseq
updated 10 months ago by 58k • written 10 months ago by • 0
0
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0
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202
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About metadata columns in Grange objects required for ChIPseeker analysis
ChIPseeker
11 months ago ahua217 ▴ 10
0
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0
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207
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How to get the raw numbers of annotated features by ChIPseeker?
ChIPseeker
11 months ago bioinfouser2 ▴ 10
0
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1
reply
308
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ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
ChiPseeker plotAnnoPie
12 months ago amafon95 • 0
0
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0
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218
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p value after enrichPeakOverlap analysis in ChIPseeker
ChIPseeker
13 months ago mwong043 • 0
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0
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239
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ChIPseeker error when I wnat to get tagMatrix
Chipseeker TxDb getpromoters software error
16 months ago hfyuan2016 • 0
0
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0
replies
195
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Potential oversimplification in the overlap function
ChIPseeker
16 months ago konsta.kukkonen • 0
1
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0
replies
193
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Functional enrichment analysis issue/ChIPseeker package
ChIPseeker
16 months ago egbastakis • 0
0
votes
1
reply
329
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ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
17 months ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
264
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ChIPSeeker - options(ChIPseeker.downstreamDistance = 500) seems not work
ChIPseeker
19 months ago Guandong Shang ▴ 20
0
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1
reply
351
views
Using EnsDb.Hsapiens.v86 database doesn't fetch the ENSEMBL IDs
ChIPseeker
24 months ago sutturka • 0
1
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2
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1.8k
views
Unable to annotate the differential peaks from DiffBind using ChIPseeker
chip seq ChIPseeker peak annotation annotatePeak() Diffbind
2.0 years ago researcher • 0
2
votes
1
reply
630
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Finding the proper universe for enrichGO and enrichKEGG - only the genes that are annotated in those ontologies
chipseeker ChIPseeker
2.1 years ago endrebak85 ▴ 30
1
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3
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393
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Error: package or namespace load failed for 'ChIPseeker': 'TxDb.Hsapiens.UCSC.hg19.knownGene' is not exported from 'namespace: TxDb.Hsapiens.UCSC.hg1…
chipseq chipseeker R Bioconductor
updated 2.2 years ago by 25k • written 2.2 years ago by ▴ 10
0
votes
1
reply
833
views
error in readPeakFile {chipseeker}
ChIPseeker readPeakFile
2.4 years ago theodore.georgomanolis • 0
0
votes
1
reply
450
views
Problem in using covplot ChIPseeker
ChIPseeker software error
2.5 years ago vasudha.sharma • 0
3
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2
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650
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How to use EnsDb in annotatePeak from package "ChIPseeker"
GRanges ChIPseeker annotatePeak TxDb EnsDb
updated 2.6 years ago by ★ 1.9k • written 2.6 years ago by ▴ 80
1
vote
1
reply
613
views
ChIPseeker genomicAnnotationPriority
annotation chipseeker
updated 8 weeks ago by • 0 • written 2.7 years ago by ▴ 10
0
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0
replies
522
views
How to use ChIPseeker for getting genebody annotations.
chipseeker chipseq
2.7 years ago bioinfouser2 ▴ 10
0
votes
2
replies
538
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how to get frequencies from plotDistToTSS
chipseeker
2.8 years ago KKO • 0
1
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0
replies
435
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ChipSeeker Flanking gene annotation
chipseeker
3.0 years ago Lauma R ▴ 10
3
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4
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825
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ChIPseeker/Question about ''annoatePeak' function and for Bioconductor AnnotationData Packages for L.japonicus
chipseeker Bioconductor AnnotationData Packages Lotus japonicus ChIPseq
updated 3.0 years ago by 58k • written 3.0 years ago by • 0
0
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0
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371
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covplot and getChrCov function
chipseeker
3.0 years ago xiaofeiwang198266 • 0
1
vote
3
replies
721
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How to do functional enrichment analysis for only promoter regions using ChIPseeker
chipseeker chipseq
updated 3.0 years ago by ★ 1.2k • written 3.1 years ago by ▴ 10
0
votes
0
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376
views
How to get the genome distribution in proportion of promoter, 1st exon, other exon, 1st intron, other intron, distal intergenic, etc from a species
chipseeker
3.1 years ago bright602 • 0
3
votes
6
replies
725
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ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
3.2 years ago 94133 • 0
1
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1
reply
1.2k
views
Error: package or namespace load failed for 'ChIPseeker' in dyn.load(file, DLLpath = DLLpath
chipseeker
3.2 years ago liucz200904 • 0
0
votes
1
reply
431
views
How does vennplot() within Chipseeker define overlaps?
chipseeker vennplot
3.3 years ago kevin.potter12 • 0
0
votes
1
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381
views
Error in getGenomicAnnoStat(peak.gr) : object 'plab' not found
ChIPseeker
updated 3.4 years ago by ★ 1.2k • written 3.4 years ago by • 0
0
votes
3
replies
908
views
"input object should be a named list" error in ChIPseeker
ChIPseeker named list error plotAnnoBar plotDistToTSS vennplot
updated 3.5 years ago by ★ 1.2k • written 3.5 years ago by • 0
0
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0
replies
602
views
problem on getpromoters on hg38
chipseeker ChIPseeker
3.6 years ago jarod_v6@libero.it ▴ 40
0
votes
3
replies
826
views
custom background list for ReactomePA
reactomepa chipseeker Guangchuang Yu
3.7 years ago andrew.gehrke • 0
0
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2
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1.2k
views
custom annotation in annotatePeak
chipseeker Guangchuang Yu
3.7 years ago andrew.gehrke • 0
5
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7
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976
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ChIPSeeker enrichPeakOverlap external dataset downloads
chipseeker chipseq chip
updated 3.7 years ago by ★ 1.2k • written 3.7 years ago by ▴ 60
0
votes
0
replies
892
views
Intergenic assigned to genes by ChIPseeker
chipseeker txdb.mmusculus.ucsc.mm10.knowngene
3.7 years ago doan.dinh • 0
0
votes
1
reply
897
views
how to define the downstream range in ChIPseeker
ChIPseeker H3K27me3 chipseq chipseeker
updated 3.8 years ago by ★ 1.2k • written 3.8 years ago by ▴ 10
0
votes
0
replies
577
views
Removing/combining specific annotation categories in ChIPSeeker plots/analysis
chipseeker chipseq annotation
3.8 years ago rbronste ▴ 60
2
votes
3
replies
1.1k
views
ChIPseeker peak annotation tssRegion
chipseeker annotation chipseq
3.9 years ago • updated 3.8 years ago lifeng.liu.biology ▴ 10
50 results • Page 1 of 1
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