Question about DMRcate
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chuanjiao6 • 0
@chuanjiao6-14629
Last seen 10 weeks ago
France

Hi, I am running the code DMRcate, but I have this problem. I updated the packages and it doesn't work. Anyone has a solution?

Code should be placed in three backticks as shown below

casevscontrol.ranges <- extractRanges(dmrcate.res, genome="hg38")
snapshotDate(): 2023-10-24
see ?DMRcatedata and browseVignettes('DMRcatedata') for documentation
loading from cache
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': unable to find an inherited method for function 'findOverlaps' for signature '"GRanges", "QFeatures"'
> BiocManager::valid()
[1] TRUE


sessionInfo( )
DMRcate dmrcate • 262 views
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3
Entering edit mode
@gordon-smyth
Last seen 2 hours ago
WEHI, Melbourne, Australia

You appear to have stored intermediate results in a cache. If you update R packages, you need to delete the old cache.

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rm -r ~/.cache/R 

works for me. Thanks!

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