Question about DMRcate
1
0
Entering edit mode
chuanjiao6 • 0
@chuanjiao6-14629
Last seen 5 months ago
France

Hi, I am running the code DMRcate, but I have this problem. I updated the packages and it doesn't work. Anyone has a solution?

Code should be placed in three backticks as shown below

casevscontrol.ranges <- extractRanges(dmrcate.res, genome="hg38")
snapshotDate(): 2023-10-24
see ?DMRcatedata and browseVignettes('DMRcatedata') for documentation
loading from cache
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': unable to find an inherited method for function 'findOverlaps' for signature '"GRanges", "QFeatures"'
> BiocManager::valid()
[1] TRUE


sessionInfo( )
DMRcate dmrcate • 352 views
ADD COMMENT
3
Entering edit mode
@gordon-smyth
Last seen 33 minutes ago
WEHI, Melbourne, Australia

You appear to have stored intermediate results in a cache. If you update R packages, you need to delete the old cache.

ADD COMMENT
0
Entering edit mode
rm -r ~/.cache/R 

works for me. Thanks!

ADD REPLY

Login before adding your answer.

Traffic: 797 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6