Showing : DMRcate • reset
2
votes
6
replies
329
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 4 weeks ago by ▴ 140 • written 5 weeks ago by • 0
0
votes
0
replies
191
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
3 months ago jose.ramirez1 • 0
6
votes
12
replies
487
views
Error when loading DMRcate
DMRcate
3 months ago Bazingastats • 0
0
votes
0
replies
137
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
3 months ago gilliangoobie • 0
2
votes
6
replies
448
views
DMRcate
DMRcate R DMRcatedata Markdown
3 months ago yr542 • 0
0
votes
0
replies
435
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
17 months ago Ahdee ▴ 50
0
votes
1
reply
526
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 19 months ago by 62k • written 19 months ago by ▴ 30
0
votes
2
replies
496
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
20 months ago xie186 • 0
0
votes
6
replies
863
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 22 months ago by ▴ 10 • written 2.9 years ago by ▴ 10
1
vote
2
replies
1.0k
views
DMRcate extractRanges error
DMRcate
2.2 years ago macsue.jacques ▴ 10
0
votes
0
replies
460
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
2.5 years ago Mike ▴ 10
3
votes
4
replies
606
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 2.7 years ago by ▴ 140 • written 2.7 years ago by ▴ 10
0
votes
2
replies
525
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
2.8 years ago zh9118 • 0
4
votes
9
replies
2.1k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 19 months ago by ▴ 30 • written 3.0 years ago by ▴ 10
1
vote
8
replies
1.1k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 3.0 years ago by ▴ 140 • written 3.0 years ago by ▴ 40
3
votes
5
replies
844
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 3.6 years ago by 62k • written 3.6 years ago by ▴ 10
0
votes
3
replies
735
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 3.8 years ago by ▴ 140 • written 3.8 years ago by • 0
0
votes
2
replies
758
views
cpg.annotate model requirements
DMRcate ChAMP
updated 3.8 years ago by ▴ 270 • written 3.8 years ago by • 0
1
vote
3
replies
874
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 4.0 years ago by 62k • written 4.0 years ago by ▴ 10
2
votes
18
replies
3.9k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 4.9 years ago by • 0 • written 7.0 years ago by ▴ 160
0
votes
3
replies
1.1k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
4.9 years ago 574233829 • 0
2
votes
6
replies
1.3k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 5.1 years ago by ▴ 140 • written 5.1 years ago by • 0
0
votes
3
replies
1.3k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 5.9 years ago by ▴ 90 • written 5.9 years ago by • 0
1
vote
2
replies
1.1k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 6.0 years ago by ▴ 140 • written 6.0 years ago by • 0
1
vote
3
replies
1.2k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 6.1 years ago by 62k • written 6.1 years ago by ▴ 10
0
votes
9
replies
2.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 6.1 years ago by ▴ 140 • written 6.2 years ago by ★ 2.0k
1
vote
10
replies
2.5k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 6.2 years ago by ▴ 140 • written 6.2 years ago by ▴ 10
0
votes
1
reply
1.2k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 6.3 years ago by ▴ 140 • written 6.3 years ago by ▴ 10
0
votes
2
replies
1.1k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 6.4 years ago by ▴ 140 • written 6.4 years ago by • 0
1
vote
2
replies
854
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 6.4 years ago by ▴ 140 • written 6.4 years ago by ▴ 10
0
votes
1
reply
754
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 6.4 years ago by ▴ 140 • written 6.4 years ago by • 0
0
votes
9
replies
17k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 6.4 years ago by ▴ 140 • written 6.6 years ago by • 0
1
vote
15
replies
1.7k
views
DMRcate results meanpvals
dmrcate
updated 6.9 years ago by ▴ 140 • written 6.9 years ago by ▴ 160
0
votes
1
reply
731
views
conflicts in chromosome number
DMRcate
updated 6.9 years ago by ▴ 140 • written 6.9 years ago by • 0
2
votes
2
replies
1.3k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 7.4 years ago by ▴ 140 • written 7.4 years ago by • 0
0
votes
5
replies
1.7k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
7.5 years ago par.larsson • 0
2
votes
2
replies
1.9k
views
DMRcate cpg.annotate error
dmrcate design matrix
updated 7.5 years ago by ▴ 140 • written 7.5 years ago by ▴ 160
1
vote
1
reply
1.2k
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
updated 7.8 years ago by ▴ 360 • written 7.8 years ago by • 0
0
votes
3
replies
2.7k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 8.1 years ago by ▴ 140 • written 8.1 years ago by ▴ 120
39 results • Page 1 of 1
Recent ...
Replies
Answer: Trouble Loading Data into Champ by hfbarrerat • 0
Try myLoad <- champ.load("raw/",arraytype="EPIC")
Comment: BiocGenerics binary is outdated for macOS ARM by jennifer.wokaty ▴ 60
Thanks, Mike, for posting about this and thanks to Lori for noticing the lock. I removed it and RProtoBufLib passes R CMD check. Unfortunat…
Comment: BiocGenerics binary is outdated for macOS ARM by Michael Steinbaugh ▴ 90
Ah thanks for the update. Yeah I see that the flowClust release is the culprit: https://www.bioconductor.org/packages/release/bioc/html/flo…
Comment: Submitting BSgenome package for a new assembly by Manish • 0
Thanks for the info. This is very helpful. -Manish
Comment: Merge 2 accounts, or delete 1 account. by shepherl 3.5k
are you talking specifically on the support site or elsewhere also?
Votes
flowCore: using read.FCS with which.lines is not time efficient?
Comment: BiocGenerics binary is outdated for macOS ARM
Comment: Submitting BSgenome package for a new assembly
How to create "trait data" file for WGCNA
Comment: Visualization of negative log CPM values
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