Unable to install clusterProfiler
0
0
Entering edit mode
harsh • 0
@12d4be3b
Last seen 25 days ago
India

I was trying to install clusterProfiler on google colab but getting this error Code used to install -

 if (!require("BiocManager", quietly = TRUE))

install.packages("BiocManager")

BiocManager::install("clusterProfiler")

Tell me how to fix it.

Not able to install clusterProfiler in google colab

clusterProfiler • 208 views
ADD COMMENT
0
Entering edit mode

it looks like the dependencies needed also failed to install. Does it show specific ERROR's for the packages listed? For "igraph", they made updates recently and I had to install system dependencies that are needed; you might need to install a system dependency for these packages to install correctly.

ADD REPLY
0
Entering edit mode

I am trying to install it on google colab. So how should I fix it there ? If the same way then what system dependency should I install ?

ADD REPLY
0
Entering edit mode

download.file("https://cran.r-project.org/src/contrib/Archive/igraph/igraph_1.6.0.tar.gz", "igraph_1.6.0.tar.gz") install.packages("igraph_1.6.0.tar.gz", repos = NULL, type = "source")

download.file("https://cran.r-project.org/src/contrib/Archive/tidygraph/tidygraph_1.3.0.tar.gz", "tidygraph_1.3.0.tar.gz") install.packages("tidygraph_1.3.0.tar.gz", repos = NULL, type = "source")

ADD REPLY

Login before adding your answer.

Traffic: 591 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6