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I am suddenly having trouble using goseq for supportedOrganisms as bioconductor suddenly seems unable to retrieve the appropriate data from the UCSC database.
using the supportedOrganisms() command results in the below error
Error in names(trackIds) <- sub("^ ", "", nms)
I have seen previous mentions of this bug having occurred years ago as a consequence of some change in naming scheme in the UCSC database or something like that, and it was fixed in a later update. Can anyone help me with why I might be encountering this error now?
Thank you.
Thank you,
I will therefore treat this otherwise supported organism as an unsupported one, and extract gene length and GO annotation info from GFF3 files manually.