minfi latest update for EPIC V2 chip
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e1271094 • 0
@5a72c261
Last seen 6 days ago
Singapore

Hi everyone,

May I ask what is the most updated EPIC V2 chip analysis using minfi package?

Is it still using the annotation provided by jokergoo?

install("jokergoo/IlluminaHumanMethylationEPICv2manifest")

install("jokergoo/IlluminaHumanMethylationEPICv2anno.20a1.hg38")

And would anyone be kind enough to share the latest pipeline to process EPIC V2 chip methylation data?

Thank you very much.

minfi minfiDataEPIC • 222 views
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@james-w-macdonald-5106
Last seen 2 days ago
United States

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for minfi so it will now distinguish the original EPIC from the V2 chip. I don't know if there is a consensus as to what one should do with the individual forward and reverse strand probes however.

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