Can we compare 3 different experimental conditions with DESeq2?
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Esteban • 0
@6601e5e9
Last seen 4 days ago
Canada

Hi everyone, I'm very new in the computational biology world. I'm wondering if I can compare by using DESeq2 3 or more conditions. Example: in case I have

  1. control (n=4)
  2. disease model (n=4)
  3. disease model+treatment (n=4)

Should I do an ANOVA with a pos-hoc analysis instead? Thanks

Thank you very much.

E

DESeq2 StatisticalMethod • 106 views
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swbarnes2 ★ 1.4k
@swbarnes2-14086
Last seen 2 hours ago
San Diego

You only have three groups, just do 3 comparisons. You can use venn diagrams or upsetr to look at overlapping DE genes between the three comparisons.

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