Showing : StatisticalMethod • reset
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 4 weeks ago by 33k • written 4 weeks ago by • 0
5
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6
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3 months ago by 43k • written 3 months ago by ▴ 10
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3
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 3 months ago by 33k • written 3 months ago by • 0
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
5 months ago jol.espinoz ▴ 40
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p adjusted value not available
StatisticalMethod DESeq2
updated 7 months ago by 3.1k • written 7 months ago by • 0
5 results • Page 1 of 1
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Comment: Data input for aracne2regulon function in viper package by Keith Hughitt ▴ 130
Hi, I'm afraid not, so I don't think I can be much help, unfortunately. In the past, the authors of ARACNe-AP were generally quite responsi…
Comment: Data input for aracne2regulon function in viper package by Luna_P • 0
Hello Keith, I am currently trying to use my ARACNE-AP generated networks in Viper. I did all three steps you mentioned above but my prob…
Answer: DESeq2 for allele-specific expression with contrasts between conditions by Michael Love 33k
There is a section in the vignette on interactions that will help you here. You want to test for within-individual effects (`allele`) and c…
Answer: Issues with Tximport by Michael Love 33k
Your file has no version numbers, while your `tx2gene` does have version numbers. While the names look similar, they are not a match. tximp…
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w by Michael Love 33k
This is fine and ignorable, it is coming from upstream packages: our use of a TxDb object to pull out transcript to gene mappings.
Votes
Comment: DESeq2: NA's in mcols(object)$betaConv
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w
simultaneous use of robust and weighting methods in limma
simultaneous use of robust and weighting methods in limma
Answer: RUVSeq and Salmon
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Popular Question to Keith Hughitt ▴ 130
Scholar to Aaron Lun ★ 26k
Teacher to Martin Morgan 25k
Teacher to alexvpickering ▴ 110
Popular Question to k.vitting.seerup ▴ 100
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