Biostar StatisticalMethod

Showing : StatisticalMethod • reset

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260

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edgeR StatisticalMethod

6 days ago • updated 22 hours ago Field -Ye • 0

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163

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FunctionalAnnotation StatisticalMethod

3 months ago • updated 12 weeks ago Aneesha • 0

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145

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StatisticalMethod DESeq2

updated 4 months ago by Michael Love 34k • written 4 months ago by Saif • 0

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404

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Proteomics limma StatisticalMethod

updated 6 months ago by Gordon Smyth 43k • written 6 months ago by Steve ▴ 10

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225

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StatisticalMethod DESeq2 phyloseq

updated 7 months ago by Michael Love 34k • written 7 months ago by zardbid • 0

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179

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Network StatisticalMethod WGCNA ExpressionData

8 months ago jol.espinoz ▴ 40

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166

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StatisticalMethod DESeq2

updated 10 months ago by Kevin Blighe 3.4k • written 10 months ago by marie • 0

7 results • Page 1 of 1

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Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Comment: "full model matrix is less than full rank" by ATpoint ▴ 840

My best guess is that young and old are not "young" or "old" but include some hidden whitespaces like " young" or "old ". That would then m…

Votes

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

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Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330