Showing : StatisticalMethod • reset
3
votes
4
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650
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p-adjusted values in multiple comparisons
StatisticalMethod limma RnaSeqSampleSizeData
updated 4 months ago by • 0 • written 5 months ago by • 0
0
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0
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276
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
10 months ago user_bioinfo • 0
1
vote
2
replies
522
views
Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 14 months ago by • 0
0
votes
1
reply
779
views
Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 20 months ago by ★ 1.4k • written 20 months ago by • 0
0
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0
replies
694
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
20 months ago pierre.devillemereuil • 0
0
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3
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1.7k
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 21 months ago by ★ 5.0k • written 21 months ago by • 0
2
votes
2
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4.5k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
2.1 years ago Linton • 0
1
vote
2
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1.4k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
2.1 years ago Sabiha ▴ 20
2
votes
2
replies
1.1k
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
2.2 years ago Manthos • 0
6
votes
2
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2.4k
views
DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 2.3 years ago by 53k • written 2.3 years ago by ▴ 10
3
votes
2
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1.3k
views
Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 2.6 years ago by 53k • written 2.6 years ago by ▴ 30
2
votes
3
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4.0k
views
deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by ▴ 10
2
votes
4
replies
1.3k
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
3.0 years ago Loïc • 0
0
votes
2
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1.5k
views
Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
3.0 years ago rcreswell01 • 0
1
vote
3
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1.9k
views
Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 3.0 years ago by 53k • written 3.0 years ago by ▴ 10
0
votes
1
reply
876
views
DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 3.2 years ago by 43k • written 3.3 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
3.3 years ago Laurent Gatto 1.6k
1
vote
2
replies
1.9k
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
3.4 years ago walkerrh95 • 0
0
votes
0
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1.5k
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
3.4 years ago gaow • 0
0
votes
0
replies
872
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.9 years ago dong ▴ 10
2
votes
3
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6.7k
views
Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.8 years ago by • 0 • written 4.0 years ago by • 0
6
votes
4
replies
1.6k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
4.1 years ago Giovanni • 0
2
votes
7
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2.3k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
4.4 years ago Field -Ye • 0
0
votes
2
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2.3k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
4.6 years ago Aneesha • 0
0
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1
reply
1.2k
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
6
votes
6
replies
2.7k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.9 years ago by 53k • written 4.9 years ago by ▴ 10
1
vote
3
replies
1.7k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
0
votes
0
replies
2.0k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
5.1 years ago jol.espinoz ▴ 40
0
votes
2
replies
1.1k
views
p adjusted value not available
StatisticalMethod DESeq2
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by • 0
29 results • Page 1 of 1
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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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