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StatisticalMethod
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2
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2
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175
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression
DESeq2
RNASeqData
RNASeq
StatisticalMethod
15 days ago • updated 14 days ago
Manthos
• 0
4
votes
2
replies
252
views
DecideTest vs topTAGs in edgeR
RNAseq
StatisticalMethod
edgeR
updated 5 weeks ago by
Gordon Smyth
49k • written 5 weeks ago by
alvaroperona1
▴ 10
3
votes
2
replies
472
views
Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod
RNASeqData
edgeR
DESeq2
updated 5 months ago by
Gordon Smyth
49k • written 5 months ago by
CDSPARKS
▴ 10
2
votes
3
replies
1.1k
views
deseq2 normalization and statistical method
normalization
deseq2
StatisticalMethod
updated 8 months ago by
ATpoint
★ 3.6k • written 8 months ago by
SH
• 0
2
votes
4
replies
581
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2
StatisticalMethod
9 months ago
Loïc
• 0
0
votes
2
replies
518
views
Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent
StatisticalMethod
edgeR
MultidimensionalScaling
Normalization
9 months ago
rcreswell01
• 0
1
vote
3
replies
584
views
Limma-voom with inverse probability weights (similar to sample weights)
limma
limma-voom
StatisticalMethod
updated 10 months ago by
Gordon Smyth
49k • written 10 months ago by
jay
• 0
0
votes
1
reply
428
views
DESeq2 paired multifactor test
DESeq2
StatisticalMethod
updated 12 months ago by
Michael Love
41k • written 13 months ago by
ijvechetti
▴ 10
0
votes
0
replies
421
views
Job:
Academic position in Non-clinical Biostatistics
JobPosting
StatisticalMethod
13 months ago
Laurent Gatto
1.6k
1
vote
2
replies
698
views
Limma adj.p.value the same for many different p.values
limmaGUI
limma
adj.p.value
StatisticalMethod
14 months ago
walkerrh95
• 0
0
votes
0
replies
675
views
Job:
Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's
StatisticalMethod
Genetics
molecularQTL
FunctionalGenomics
14 months ago
gaow
• 0
0
votes
0
replies
468
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
20 months ago
dong
▴ 10
2
votes
3
replies
2.4k
views
Differential gene expression and (adjusted) p-values
edgeR
StatisticalMethod
updated 19 months ago by
ruez.richard
• 0 • written 22 months ago by
tmms
• 0
6
votes
4
replies
831
views
Limma prametrization
limm
MathematicalBiology
limmaGUI
StatisticalMethod
22 months ago
Giovanni
• 0
2
votes
7
replies
1.3k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR
StatisticalMethod
2.2 years ago
Field -Ye
• 0
0
votes
2
replies
1.1k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation
StatisticalMethod
2.5 years ago • updated 2.4 years ago
Aneesha
• 0
0
votes
1
reply
619
views
DESeq2 Design matrix
StatisticalMethod
DESeq2
updated 2.6 years ago by
Michael Love
41k • written 2.6 years ago by
Saif
• 0
6
votes
6
replies
1.4k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics
limma
StatisticalMethod
updated 2.7 years ago by
Gordon Smyth
49k • written 2.7 years ago by
Steve
▴ 10
1
vote
3
replies
915
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod
DESeq2
phyloseq
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
zardbid
• 0
0
votes
0
replies
1.0k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network
StatisticalMethod
WGCNA
ExpressionData
2.9 years ago
jol.espinoz
▴ 40
0
votes
2
replies
620
views
p adjusted value not available
StatisticalMethod
DESeq2
updated 3.0 years ago by
Kevin Blighe
3.9k • written 3.0 years ago by
marie
• 0
21 results • Page
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Replies
Answer: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
Peter Hickey
▴ 650
An example usually helps. Here's a way to do it using base R. ``` library(DropletUtils) # Mocking up some 10X HDF5-formatted data. out <-…
Answer: rDGIdb package inconsistency with web interface
by
James W. MacDonald
64k
It doesn't appear to be inconsistent. Here is the [API call result][1]. And the [query on the old version][2]. Although as you may be notin…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
Peter Hickey
▴ 650
Initially posted to https://github.com/MarioniLab/DropletUtils/issues/104
Comment: How to read fcs3.2 files
by
James W. MacDonald
64k
You need to supply more information than saying you tried things and they didn't work. Show code with error messages.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Looks good then.
Votes
Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
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