Showing : StatisticalMethod • reset
2
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175
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
15 days ago • updated 14 days ago Manthos • 0
4
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2
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252
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 5 weeks ago by 49k • written 5 weeks ago by ▴ 10
3
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2
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472
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 5 months ago by 49k • written 5 months ago by ▴ 10
2
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3
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1.1k
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 8 months ago by ★ 3.6k • written 8 months ago by • 0
2
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4
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581
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
9 months ago Loïc • 0
0
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2
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518
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
9 months ago rcreswell01 • 0
1
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3
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584
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 10 months ago by 49k • written 10 months ago by • 0
0
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1
reply
428
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 12 months ago by 41k • written 13 months ago by ▴ 10
0
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0
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421
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
13 months ago Laurent Gatto 1.6k
1
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2
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698
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
14 months ago walkerrh95 • 0
0
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0
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
14 months ago gaow • 0
0
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0
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468
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
20 months ago dong ▴ 10
2
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3
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2.4k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 19 months ago by • 0 • written 22 months ago by • 0
6
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4
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831
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
22 months ago Giovanni • 0
2
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7
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1.3k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
2.2 years ago Field -Ye • 0
0
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2
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1.1k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
2.5 years ago • updated 2.4 years ago Aneesha • 0
0
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1
reply
619
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 2.6 years ago by 41k • written 2.6 years ago by • 0
6
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6
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1.4k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 2.7 years ago by 49k • written 2.7 years ago by ▴ 10
1
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3
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915
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 2.8 years ago by 41k • written 2.8 years ago by • 0
0
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0
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1.0k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
2.9 years ago jol.espinoz ▴ 40
0
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2
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620
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p adjusted value not available
StatisticalMethod DESeq2
updated 3.0 years ago by 3.9k • written 3.0 years ago by • 0
21 results • Page 1 of 1
Recent ...
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Answer: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by Peter Hickey ▴ 650
An example usually helps. Here's a way to do it using base R. ``` library(DropletUtils) # Mocking up some 10X HDF5-formatted data. out <-…
Answer: rDGIdb package inconsistency with web interface by James W. MacDonald 64k
It doesn't appear to be inconsistent. Here is the [API call result][1]. And the [query on the old version][2]. Although as you may be notin…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by Peter Hickey ▴ 650
Initially posted to https://github.com/MarioniLab/DropletUtils/issues/104
Comment: How to read fcs3.2 files by James W. MacDonald 64k
You need to supply more information than saying you tried things and they didn't work. Show code with error messages.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Looks good then.
Votes
Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
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