Showing : StatisticalMethod • reset
3
votes
4
replies
670
views
p-adjusted values in multiple comparisons
StatisticalMethod limma RnaSeqSampleSizeData
updated 5 months ago by • 0 • written 6 months ago by • 0
0
votes
0
replies
280
views
Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
10 months ago user_bioinfo • 0
1
vote
2
replies
526
views
Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 15 months ago by • 0
0
votes
1
reply
783
views
Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 20 months ago by ★ 1.4k • written 20 months ago by • 0
0
votes
0
replies
701
views
Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
21 months ago pierre.devillemereuil • 0
0
votes
3
replies
1.8k
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 21 months ago by ★ 5.0k • written 21 months ago by • 0
2
votes
2
replies
4.6k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
2.1 years ago Linton • 0
1
vote
2
replies
1.4k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
2.2 years ago Sabiha ▴ 20
2
votes
2
replies
1.2k
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
2.2 years ago Manthos • 0
6
votes
2
replies
2.5k
views
DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 2.3 years ago by 53k • written 2.3 years ago by ▴ 10
3
votes
2
replies
1.3k
views
Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 2.7 years ago by 53k • written 2.7 years ago by ▴ 30
2
votes
3
replies
4.0k
views
deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by ▴ 10
2
votes
4
replies
1.3k
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
3.0 years ago Loïc • 0
0
votes
2
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1.5k
views
Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
3.0 years ago rcreswell01 • 0
1
vote
3
replies
1.9k
views
Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 3.0 years ago by 53k • written 3.0 years ago by ▴ 10
0
votes
1
reply
879
views
DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 3.2 years ago by 43k • written 3.3 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
3.3 years ago Laurent Gatto 1.6k
1
vote
2
replies
1.9k
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
3.4 years ago walkerrh95 • 0
0
votes
0
replies
1.5k
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
3.4 years ago gaow • 0
0
votes
0
replies
874
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.9 years ago dong ▴ 10
2
votes
3
replies
6.9k
views
Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.8 years ago by • 0 • written 4.1 years ago by • 0
6
votes
4
replies
1.7k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
4.1 years ago Giovanni • 0
2
votes
7
replies
2.3k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
4.4 years ago Field -Ye • 0
0
votes
2
replies
2.4k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
4.7 years ago Aneesha • 0
0
votes
1
reply
1.2k
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
6
votes
6
replies
2.7k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.9 years ago by 53k • written 4.9 years ago by ▴ 10
1
vote
3
replies
1.8k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
0
votes
0
replies
2.0k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
5.1 years ago jol.espinoz ▴ 40
0
votes
2
replies
1.1k
views
p adjusted value not available
StatisticalMethod DESeq2
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by • 0
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A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
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