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Hello,
I'm using ENmix to achieve my methylome analysis but I cannot calculate the DMR.
Regarding the DMR, the manuals specify:
The input should be a data frame with column names "chr","start", "end","p", and "probe"
When, during the pipeline, such a format file is created?
Thank you for your help.
Alex
These are from downstream association analysis result; The pipeline is only for data preprocessing and quality control. P values are association P values; chr and start are the CpG chromosome and chromosome position, which can be extracted using command getCGinfo, like cginfo=getCGinfo(rgSet); end is chromosome position +1.
Thank you very much for these informations.