Question

Installing Bioconductor

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mariyahgeorge14 • 0

@cbb0ce5c

Last seen 8 weeks ago

India

I am trying to install Bioconductor version 3.16 in R 4.2.3 in Linux cluster. However I encounter the below issue


> if (!require("BiocManager", quietly = TRUE))
+     install.packages("BiocManager")
Bioconductor version 3.16 (BiocManager 1.30.23), R 4.2.3 (2023-03-15)
Bioconductor version '3.16' is out-of-date; the current release version '3.19'
  is available with R version '4.4'; see https://bioconductor.org/install

Bioconductor • 293 views

ADD COMMENT • link updated 7 weeks ago by Lluís Revilla Sancho ▴ 730 • written 8 weeks ago by mariyahgeorge14 • 0

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Is this a issue or a warning? From what I read it only tells you that you are not using the latest version of R with the latest Bioconductor release. If you want to keep that R version you can keep using Bioconductor 3.16

ADD REPLY • link 7 weeks ago Lluís Revilla Sancho ▴ 730

score 0 · Answer 1 · 2024-07-12

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vincent.carbonnier • 0

@d215cb6b

Last seen 37 minutes ago

France

Hello,

I suppose that you need to update your BiocManager, so precise the version you need:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(version = "3.19")

Best regards,

Vincent

ADD COMMENT • link 8 weeks ago vincent.carbonnier • 0