How to rank DEG for GSEA using DEseq2 result ?
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picasa1983 • 0
@picasa1983-14806
Last seen 5 weeks ago
USA

Hi,

I used to work with limma voom, and for GSEA, I ranked my genes based on the t-value.

However, with the DESeq2 result table, I don't have this metric. How can I rank my genes?

Thanks

DESeq2 limma GeneSetEnrichment • 447 views
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ATpoint ★ 4.5k
@atpoint-13662
Last seen 2 days ago
Germany

Please check "similar posts" on the righthand-side of this post. This has been asked many times before.

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