Biostar GeneSetEnrichment

Showing : GeneSetEnrichment • reset

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256

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roast DESeq2 GeneSetEnrichment

updated 9 months ago by Gordon Smyth 43k • written 9 months ago by prabin.dm • 0

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289

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clusterProfiler GeneSetEnrichment enrichplot

updated 8 months ago by Emilia ▴ 30 • written 9 months ago by saw44 • 0

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157

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ReactomePA clusterProfiler GeneSetEnrichment

10 months ago paun_bio • 0

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1.6k

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clusterProfiler GO GO enrichment genesetenrichment

updated 3.8 years ago by Guangchuang Yu ★ 1.2k • written 3.8 years ago by Huang, Lei [BSD] - CRI ▴ 20

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1.9k

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software error clusterprofiler GO genesetenrichment

5.4 years ago José Luis Lavín ▴ 10

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642

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limma genesetenrichment

updated 5.5 years ago by Steve Lianoglou 13k • written 5.5 years ago by Aditya ▴ 120

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821

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genesetenrichment functional enrichment enrichmentbrowser News

5.6 years ago Ludwig Geistlinger ▴ 50

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2.7k

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goseq go genesetenrichment

updated 5.8 years ago by Gordon Smyth 43k • written 5.8 years ago by Jon Bråte ▴ 180

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624

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KEGG genesetenrichment elim

updated 5.8 years ago by James W. MacDonald 58k • written 5.8 years ago by jacorvar ▴ 40

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1.4k

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goseq genesetenrichment annotation

updated 6.1 years ago by Nadia Davidson ▴ 310 • written 6.1 years ago by xyliu00 ▴ 20

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2.3k

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genesetenrichment pathways reactome.db

updated 6.5 years ago by willem.ligtenberg ▴ 150 • written 6.8 years ago by Guangchuang Yu ★ 1.2k

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3.9k

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GO topgo genesetenrichment

updated 6.7 years ago by Luo Weijun ★ 1.5k • written 6.7 years ago by Alan Smith ▴ 150

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645

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geneexpression genesetenrichment segAnglePo

6.8 years ago Peter.Wood • 0

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1.1k

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enrichment genesetenrichment dose gosemsim

6.8 years ago Guangchuang Yu ★ 1.2k

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1.1k

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Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI

updated 7.5 years ago by Steve Lianoglou 13k • written 7.5 years ago by Leif Väremo ▴ 70

15 results • Page 1 of 1

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Comment: Combining two groups in contrast deseq2 by Bine ▴ 20

Thank you I looked at ?results: ## Example 1: two-group comparison dds <- makeExampleDESeqDataSet(m=4) dds <- DESeq(…

Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

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Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330