Showing : GeneSetEnrichment • reset
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BubbleGUM for multi group comparison of gene set enrichment
RNASeqData GeneSetEnrichment multiGSEA
9 weeks ago sonal • 0
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1
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192
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 10 weeks ago by 63k • written 10 weeks ago by • 0
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2
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1.8k
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What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA GeneSetEnrichment
15 months ago Bhavana • 0
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1
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483
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enrichment to common gene
GeneSetEnrichment genes genetogo
updated 15 months ago by ▴ 720 • written 15 months ago by • 0
7
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13
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3.9k
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GSEA many significant gene sets despite no differentially expressed genes
GSEA GeneSetEnrichment DifferentialExpression
written 18 months ago by • 0
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998
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GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
23 months ago makrez • 0
3
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2
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991
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Self-contained gene set testing with DESeq2 results
roast DESeq2 GeneSetEnrichment
updated 2.8 years ago by 48k • written 2.8 years ago by • 0
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1
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1.1k
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Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 2.7 years ago by ▴ 30 • written 2.8 years ago by • 0
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445
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Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
2.8 years ago paun_bio • 0
4
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3
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3.1k
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Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 15 months ago by • 0 • written 5.8 years ago by ▴ 20
1
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4
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2.7k
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Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
7.4 years ago José Luis Lavín ▴ 10
1
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962
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performance of limma gene set analysis in relation to Tarca et al. (2013)
limma genesetenrichment
updated 7.5 years ago by 13k • written 7.5 years ago by ▴ 160
1
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0
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1.2k
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News: Announcing the EnrichmentBrowser 2.0
genesetenrichment functional enrichment enrichmentbrowser News
7.6 years ago Ludwig Geistlinger ▴ 50
5
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7
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4.3k
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Using goseq on non-model organism - how to define genome?
goseq go genesetenrichment
updated 7.8 years ago by 48k • written 7.8 years ago by ▴ 250
2
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1
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929
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elim method for KEGG pathways?
KEGG genesetenrichment elim
updated 7.8 years ago by 63k • written 7.8 years ago by ▴ 40
2
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2
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1.8k
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Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 8.1 years ago by ▴ 310 • written 8.1 years ago by ▴ 20
8
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14
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3.3k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 8.5 years ago by ▴ 150 • written 8.9 years ago by ★ 1.2k
1
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1
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4.9k
views
Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 8.7 years ago by ★ 1.6k • written 8.7 years ago by ▴ 150
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947
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Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
8.8 years ago Peter.Wood • 0
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1.5k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
8.8 years ago Guangchuang Yu ★ 1.2k
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1.6k
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Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 9.5 years ago by 13k • written 9.5 years ago by ▴ 70
21 results • Page 1 of 1
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Replies
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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