Showing : GeneSetEnrichment • reset
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What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA GeneSetEnrichment
7 weeks ago • updated 6 weeks ago Bhavana • 0
0
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1
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97
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enrichment to common gene
GeneSetEnrichment genes genetogo
updated 9 weeks ago by ▴ 390 • written 9 weeks ago by • 0
7
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11
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887
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GSEA many significant gene sets despite no differentially expressed genes
GSEA GeneSetEnrichment DifferentialExpression
updated 5 months ago by 46k • written 5 months ago by • 0
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324
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GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
9 months ago makrez • 0
3
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2
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672
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Self-contained gene set testing with DESeq2 results
roast DESeq2 GeneSetEnrichment
updated 20 months ago by 46k • written 20 months ago by • 0
0
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1
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612
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Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 19 months ago by ▴ 30 • written 20 months ago by • 0
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273
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Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
21 months ago paun_bio • 0
4
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3
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2.2k
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Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 6 weeks ago by • 0 • written 4.7 years ago by ▴ 20
1
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4
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2.2k
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Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
6.3 years ago José Luis Lavín ▴ 10
1
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0
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749
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performance of limma gene set analysis in relation to Tarca et al. (2013)
limma genesetenrichment
updated 6.4 years ago by 13k • written 6.4 years ago by ▴ 140
1
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947
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News: Announcing the EnrichmentBrowser 2.0
genesetenrichment functional enrichment enrichmentbrowser News
6.5 years ago Ludwig Geistlinger ▴ 50
2
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7
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3.4k
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Using goseq on non-model organism - how to define genome?
goseq go genesetenrichment
updated 6.7 years ago by 46k • written 6.7 years ago by ▴ 190
2
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1
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745
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elim method for KEGG pathways?
KEGG genesetenrichment elim
updated 6.7 years ago by 60k • written 6.7 years ago by ▴ 40
2
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2
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1.5k
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Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 7.0 years ago by ▴ 310 • written 7.0 years ago by ▴ 20
8
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14
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2.7k
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reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 7.4 years ago by ▴ 150 • written 7.8 years ago by ★ 1.2k
1
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1
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4.3k
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Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 7.6 years ago by ★ 1.5k • written 7.6 years ago by ▴ 150
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0
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742
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Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
7.7 years ago Peter.Wood • 0
0
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0
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1.2k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
7.7 years ago Guangchuang Yu ★ 1.2k
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3
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1.3k
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Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 8.4 years ago by 13k • written 8.4 years ago by ▴ 70
19 results • Page 1 of 1
Recent ...
Replies
Comment: Retrieve gene summary start/end in biomart query by rbenel ▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues by e.iich • 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue by Hervé Pagès 15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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