Showing : GeneSetEnrichment • reset
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News: GSEA in R/Bioconductor course
GSEABenchmarkeR pairedGSEA GeneSetEnrichment
written 12 months ago by ▴ 10
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812
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fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea GeneSetEnrichment splines RNASeq
11 months ago GT • 0
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2
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760
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cameraPR() non directional test
CAMERA GeneSetEnrichment
12 months ago Hugo Varet ▴ 80
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1
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930
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News: Gene Set Enrichment Analysis in Bioconductor course
GSEABase GeneSetEnrichment goseq
12 months ago info ▴ 10
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1
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517
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Comparing Mock vs Infected in WT and Knockout Cells
DESeq2 DifferentialExpression DifferentialRegulation RNASeq GeneSetEnrichment
updated 12 months ago by 43k • written 12 months ago by • 0
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1.4k
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fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
18 months ago Assa Yeroslaviz ★ 1.5k
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How to rank DEG for GSEA using DEseq2 result ?
DESeq2 limma GeneSetEnrichment
updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
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2.1k
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Gene set enrichment analysis
clusterProfiler GeneSetEnrichment
updated 21 months ago by ★ 4.1k • written 21 months ago by • 0
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3.1k
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geneList error in clusterprofiler
clusterProfiler GeneSetEnrichment
22 months ago Ana • 0
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1.3k
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
23 months ago Seongsu • 0
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5.7k
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Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 23 months ago by • 0 • written 8.2 years ago by ▴ 20
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912
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BubbleGUM for multi group comparison of gene set enrichment
RNASeqData GeneSetEnrichment multiGSEA
2.6 years ago sonal • 0
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2.5k
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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6.5k
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What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA GeneSetEnrichment
3.7 years ago Bhavana • 0
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1.9k
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enrichment to common gene
GeneSetEnrichment genes genetogo
updated 3.7 years ago by ▴ 780 • written 3.7 years ago by • 0
12
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13
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14k
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GSEA many significant gene sets despite no differentially expressed genes
GSEA GeneSetEnrichment DifferentialExpression
updated 2.1 years ago by ★ 5.0k • written 4.0 years ago by ▴ 70
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2.2k
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GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
4.4 years ago makrez ▴ 10
3
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2
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2.2k
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Self-contained gene set testing with DESeq2 results
roast DESeq2 GeneSetEnrichment
updated 5.2 years ago by 53k • written 5.2 years ago by • 0
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2.0k
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Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 5.1 years ago by ▴ 40 • written 5.2 years ago by • 0
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920
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Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
5.3 years ago paun_bio • 0
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4
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4.0k
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Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
9.8 years ago José Luis Lavín ▴ 10
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1.5k
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performance of limma gene set analysis in relation to Tarca et al. (2013)
limma genesetenrichment
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ▴ 160
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News: Announcing the EnrichmentBrowser 2.0
genesetenrichment functional enrichment enrichmentbrowser News
10.1 years ago Ludwig Geistlinger ▴ 80
5
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7
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6.2k
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Using goseq on non-model organism - how to define genome?
goseq go genesetenrichment
updated 10.2 years ago by 53k • written 10.2 years ago by ▴ 270
2
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1
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1.5k
views
elim method for KEGG pathways?
KEGG genesetenrichment elim
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 40
2
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2
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2.5k
views
Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 10.5 years ago by ▴ 320 • written 10.5 years ago by ▴ 20
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14
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5.5k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 10.9 years ago by ▴ 150 • written 11.3 years ago by ★ 1.2k
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1
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6.4k
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Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 11.1 years ago by ★ 1.6k • written 11.1 years ago by ▴ 150
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Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
11.2 years ago Peter.Wood • 0
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2.1k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
11.3 years ago Guangchuang Yu ★ 1.2k
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3
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2.4k
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Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 70
31 results • Page 1 of 1
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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