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GeneSetEnrichment
•
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0
votes
2
replies
137
views
What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA
GeneSetEnrichment
7 weeks ago • updated 6 weeks ago
Bhavana
• 0
0
votes
1
reply
97
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 9 weeks ago by
Basti
▴ 390 • written 9 weeks ago by
Noy
• 0
7
votes
11
replies
887
views
GSEA many significant gene sets despite no differentially expressed genes
GSEA
GeneSetEnrichment
DifferentialExpression
updated 5 months ago by
Gordon Smyth
46k • written 5 months ago by
nhaus
• 0
0
votes
0
replies
324
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler
KEGG
GeneSetEnrichment
9 months ago
makrez
• 0
3
votes
2
replies
672
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 20 months ago by
Gordon Smyth
46k • written 20 months ago by
prabin.dm
• 0
0
votes
1
reply
612
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler
GeneSetEnrichment
enrichplot
updated 19 months ago by
Emilia
▴ 30 • written 20 months ago by
saw44
• 0
0
votes
0
replies
273
views
Clusterprofiler - best practise for missing ids
ReactomePA
clusterProfiler
GeneSetEnrichment
21 months ago
paun_bio
• 0
4
votes
3
replies
2.2k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler
GO
GO enrichment
genesetenrichment
updated 6 weeks ago by
pengmin.wang.1
• 0 • written 4.7 years ago by
Huang, Lei [BSD] - CRI
▴ 20
1
vote
4
replies
2.2k
views
Problem retrieving graphics in clusterprofiler
software error
clusterprofiler
GO
genesetenrichment
6.3 years ago
José Luis Lavín
▴ 10
1
vote
0
replies
749
views
performance of limma gene set analysis in relation to Tarca et al. (2013)
limma
genesetenrichment
updated 6.4 years ago by
Steve Lianoglou
13k • written 6.4 years ago by
Aditya
▴ 140
1
vote
0
replies
947
views
News:
Announcing the EnrichmentBrowser 2.0
genesetenrichment
functional enrichment
enrichmentbrowser
News
6.5 years ago
Ludwig Geistlinger
▴ 50
2
votes
7
replies
3.4k
views
Using goseq on non-model organism - how to define genome?
goseq
go
genesetenrichment
updated 6.7 years ago by
Gordon Smyth
46k • written 6.7 years ago by
Jon Bråte
▴ 190
2
votes
1
reply
745
views
elim method for KEGG pathways?
KEGG
genesetenrichment
elim
updated 6.7 years ago by
James W. MacDonald
60k • written 6.7 years ago by
jacorvar
▴ 40
2
votes
2
replies
1.5k
views
Goseq supported organism (felcat5) has an error when testing
goseq
genesetenrichment
annotation
updated 7.0 years ago by
Nadia Davidson
▴ 310 • written 7.0 years ago by
xyliu00
▴ 20
8
votes
14
replies
2.7k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 7.4 years ago by
willem.ligtenberg
▴ 150 • written 7.8 years ago by
Guangchuang Yu
★ 1.2k
1
vote
1
reply
4.3k
views
Reduce the redundancy of enriched GO terms
GO
topgo
genesetenrichment
updated 7.6 years ago by
Luo Weijun
★ 1.5k • written 7.6 years ago by
Alan Smith
▴ 150
0
votes
0
replies
742
views
Using segAnglePo() for a set of genes
geneexpression
genesetenrichment
segAnglePo
7.7 years ago
Peter.Wood
• 0
0
votes
0
replies
1.2k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
7.7 years ago
Guangchuang Yu
★ 1.2k
0
votes
3
replies
1.3k
views
Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 8.4 years ago by
Steve Lianoglou
13k • written 8.4 years ago by
Leif Väremo
▴ 70
19 results • Page
1 of 1
Recent ...
Replies
Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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