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Showing :
GeneSetEnrichment
•
reset
0
votes
1
reply
558
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
written 12 months ago by
info
▴ 10
0
votes
0
replies
779
views
fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea
GeneSetEnrichment
splines
RNASeq
11 months ago
GT
• 0
0
votes
2
replies
752
views
cameraPR() non directional test
CAMERA
GeneSetEnrichment
12 months ago
Hugo Varet
▴ 80
0
votes
1
reply
917
views
News:
Gene Set Enrichment Analysis in Bioconductor course
GSEABase
GeneSetEnrichment
goseq
12 months ago
info
▴ 10
0
votes
1
reply
513
views
Comparing Mock vs Infected in WT and Knockout Cells
DESeq2
DifferentialExpression
DifferentialRegulation
RNASeq
GeneSetEnrichment
updated 12 months ago by
Michael Love
43k • written 12 months ago by
Sahil
• 0
2
votes
2
replies
1.4k
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
17 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.3k
views
How to rank DEG for GSEA using DEseq2 result ?
DESeq2
limma
GeneSetEnrichment
updated 19 months ago by
ATpoint
★ 5.0k • written 19 months ago by
picasa1983
• 0
0
votes
1
reply
2.1k
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 21 months ago by
Guido Hooiveld
★ 4.1k • written 21 months ago by
aogunbaw
• 0
1
vote
2
replies
3.1k
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
22 months ago
Ana
• 0
0
votes
2
replies
1.3k
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
23 months ago
Seongsu
• 0
4
votes
4
replies
5.7k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler
GO
GO enrichment
genesetenrichment
updated 23 months ago by
jandrade
• 0 • written 8.2 years ago by
Huang, Lei [BSD] - CRI
▴ 20
0
votes
0
replies
908
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData
GeneSetEnrichment
multiGSEA
2.6 years ago
sonal
• 0
0
votes
1
reply
2.5k
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 2.6 years ago by
James W. MacDonald
68k • written 2.6 years ago by
manuelsokolov
• 0
0
votes
2
replies
6.4k
views
What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA
GeneSetEnrichment
3.7 years ago
Bhavana
• 0
0
votes
1
reply
1.8k
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 3.7 years ago by
Basti
▴ 780 • written 3.7 years ago by
Noy
• 0
12
votes
13
replies
14k
views
GSEA many significant gene sets despite no differentially expressed genes
GSEA
GeneSetEnrichment
DifferentialExpression
updated 2.1 years ago by
ATpoint
★ 5.0k • written 3.9 years ago by
nhaus
▴ 70
1
vote
0
replies
2.2k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler
KEGG
GeneSetEnrichment
4.3 years ago
makrez
▴ 10
3
votes
2
replies
2.2k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
prabin.dm
• 0
0
votes
1
reply
2.0k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler
GeneSetEnrichment
enrichplot
updated 5.1 years ago by
Emilia
▴ 40 • written 5.2 years ago by
saw44
• 0
0
votes
0
replies
920
views
Clusterprofiler - best practise for missing ids
ReactomePA
clusterProfiler
GeneSetEnrichment
5.3 years ago
paun_bio
• 0
1
vote
4
replies
4.0k
views
Problem retrieving graphics in clusterprofiler
software error
clusterprofiler
GO
genesetenrichment
9.8 years ago
José Luis Lavín
▴ 10
1
vote
0
replies
1.5k
views
performance of limma gene set analysis in relation to Tarca et al. (2013)
limma
genesetenrichment
updated 10.0 years ago by
Steve Lianoglou
★ 13k • written 10.0 years ago by
Aditya
▴ 160
1
vote
0
replies
1.8k
views
News:
Announcing the EnrichmentBrowser 2.0
genesetenrichment
functional enrichment
enrichmentbrowser
News
10.1 years ago
Ludwig Geistlinger
▴ 80
5
votes
7
replies
6.2k
views
Using goseq on non-model organism - how to define genome?
goseq
go
genesetenrichment
updated 10.2 years ago by
Gordon Smyth
53k • written 10.2 years ago by
Jon Bråte
▴ 270
2
votes
1
reply
1.5k
views
elim method for KEGG pathways?
KEGG
genesetenrichment
elim
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
jacorvar
▴ 40
2
votes
2
replies
2.5k
views
Goseq supported organism (felcat5) has an error when testing
goseq
genesetenrichment
annotation
updated 10.5 years ago by
Nadia Davidson
▴ 320 • written 10.5 years ago by
xyliu00
▴ 20
8
votes
14
replies
5.5k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 10.9 years ago by
willem.ligtenberg
▴ 150 • written 11.3 years ago by
Guangchuang Yu
★ 1.2k
1
vote
1
reply
6.4k
views
Reduce the redundancy of enriched GO terms
GO
topgo
genesetenrichment
updated 11.1 years ago by
Luo Weijun
★ 1.6k • written 11.1 years ago by
Alan Smith
▴ 150
0
votes
0
replies
1.5k
views
Using segAnglePo() for a set of genes
geneexpression
genesetenrichment
segAnglePo
11.2 years ago
Peter.Wood
• 0
0
votes
0
replies
2.1k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
11.3 years ago
Guangchuang Yu
★ 1.2k
0
votes
3
replies
2.4k
views
Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
Leif Väremo
▴ 70
31 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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