DMPs enrichment for MOUSE DNA methylation array

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Lucie • 0

@3c714e7d

Last seen 3 months ago

Switzerland

Hello,

I am analyzing mouse DNA methylation data from the Illumina Mouse Methylation array and was wondering if there was an enrichment analysis function that integrates the mouse platform? Unfortunately, mCSEA does not.

An over-representation strategy would also be interesting, but gometh doesn't support the mouse platform either.

Do you have any recommendations on how to carry out this analysis?

Thanks a lot Lucie

minfi mCSEA missme missMethyl • 452 views

ADD COMMENT • link updated 3 months ago by nrenke • 0 • written 3 months ago by Lucie • 0

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Have you tried using gometh? I don't have any mouse methylation data to test on, but a quick look at the function makes me think it might work out of the box.

ADD REPLY • link 3 months ago James W. MacDonald 67k

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You can try using KnowYourCG

ADD REPLY • link 3 months ago nrenke • 0

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