Biostar MissMethyl

Showing : missMethyl • reset

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578

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dmrcate enrichment analysis epic array goregion missmethyl

updated 11 months ago by Jovana Maksimovic ▴ 10 • written 23 months ago by yoursbassanio ▴ 10

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272

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missMethyl

updated 11 months ago by Jovana Maksimovic ▴ 10 • written 22 months ago by stewart999 ▴ 10

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1.2k

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minfi methylation dataimport minfidata missmethyl

updated 3.8 years ago by James W. MacDonald 60k • written 3.8 years ago by moldach ▴ 20

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432

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missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv

3.9 years ago peter.fransquet • 0

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416

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missmethyl gsameth

4.0 years ago owen.whitley • 0

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807

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missmethyl diffvar design matrix limma block

updated 4.1 years ago by lhuang7 ▴ 50 • written 5.0 years ago by Simone ▴ 180

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466

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methylation missmethyl RUV batch effect

4.1 years ago RC • 0

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416

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missmethyl RUV control probes

4.2 years ago Taub, Margaret ▴ 10

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836

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limma missMethyl gometh goana kegga

updated 5.0 years ago by Gordon Smyth 45k • written 5.1 years ago by Jenny Drnevich ★ 2.0k

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757

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missmethyl

updated 5.2 years ago by James W. MacDonald 60k • written 5.2 years ago by r.clifford • 0

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768

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missmethyl plots bias package

updated 5.3 years ago by belinda.phipson ▴ 10 • written 5.3 years ago by evani.radiya.dixit • 0

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834

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gene ontology GO overrepresentation analysis missmethyl gostats

updated 5.9 years ago by James W. MacDonald 60k • written 5.9 years ago by graggsd • 0

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2.2k

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limma missmethyl

6.3 years ago philipp24 ▴ 30

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2.4k

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missMethyl

6.3 years ago philipp24 ▴ 30

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820

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limma missmethyl

6.3 years ago philipp24 ▴ 30

15 results • Page 1 of 1

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Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by James W. MacDonald 60k

I assume the politics have to do with the site-wide version of R? In over 20 years of using R, I have very rarely relied on an installation…

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by Kevin • 0

James, I really appreciate your quick response. It was very helpful to see that it worked on your end. It helped us narrow down the proble…

Votes

Answer: setting sizeFactors from scran :: caculateSumFactors.

Answer: ComplexHeatmap: Change font size of annotation axis values

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

A: svaseq: how many and which surrogate variables to pick

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Scholar to jaro.slamecka ▴ 130

Scholar to James W. MacDonald 60k

Teacher to Gordon Smyth 45k