Entering edit mode
Dear Bioconductor Community,
I hope this message finds you well. I am currently working on a dataset consisting of paired samples under two conditions. After performing differential expression analysis, I have identified a substantial number of differentially expressed genes (DEGs) that I would like to prioritize using Weighted Gene Co-expression Network Analysis (WGCNA). I understand that WGCNA should be conducted using the full dataset. I am looking for guidance on how do that. thank you.
This is a question of a package outside Bioconductor, it would be best to ask to the maintainer. But i think he moved to industry and the webpage that hosted the tutorials is no longer active https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/ You might find some tutorial online, such as this ore or that other one.