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RNASeqData
•
reset
0
votes
6
replies
79
views
while doing co-expression network analysis, I am getting an error
RNASeqData
2 days ago • updated 1 day ago
Rishav
• 0
2
votes
8
replies
118
views
While trying to remove non differentially expressed genes through limma, I am getting a warning
RNASeqData
updated 3 days ago by
Gordon Smyth
42k • written 4 days ago by
Rishav
• 0
3
votes
4
replies
112
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
7 days ago • updated 6 days ago
hgalmoore
• 0
0
votes
4
replies
136
views
How to use combat in order to remove batch effects?
BatchEffect
DESeq2
RNASeqData
written 29 days ago by
Emma
• 0
3
votes
2
replies
119
views
Why some statistically differently expressed genes are not DEGs?
RNASeqData
DEGreport
edgeR
6 weeks ago
Wuschel
▴ 10
1
vote
6
replies
147
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData
DESeq2
rnaseqGene
8 weeks ago
Seaweed
• 0
7
votes
5
replies
227
views
Normalise to a housekeeping gene in DESEq2
DESeq2
housekeeping
R
RNASeqData
4 months ago
ecg1g15
• 0
3
votes
6
replies
250
views
Different contrast coding strategies in DESeq2 produce slightly different output?
DESeq2
RNASeqData
DifferentialExpression
updated 4 months ago by
Michael Love
32k • written 4 months ago by
Ben
▴ 20
2
votes
4
replies
236
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
4 months ago
ecg1g15
• 0
0
votes
1
reply
86
views
RNA gene expression data retrieval for breast cancer subtypes
RNASeqData
GenomeInfoDb
updated 4 months ago by
Kevin Blighe
2.7k • written 4 months ago by
G.G.H.T.
• 0
0
votes
3
replies
466
views
Package ‘#####’ was installed before R 4.0.0: please re-install it
Bioconductor
RNASeqData
DESeq2
Rsubread
updated 4 months ago by
James W. MacDonald
56k • written 4 months ago by
Rafael
• 0
0
votes
1
reply
705
views
RNASeq analysis - Test for effect of two variables on one (Genotype)
deseq2
multiple factor design
rnaseqdata
updated 5.0 years ago by
Michael Love
32k • written 5.0 years ago by
Dimitris Polychronopoulos
▴ 70
1
vote
2
replies
920
views
Binning expression data along with capturing gene identifiers
rnaseqdata
clustering
updated 6.2 years ago by
Johannes Rainer
★ 1.8k • written 6.2 years ago by
Alan Smith
▴ 150
0
votes
10
replies
1.7k
views
GenomicAlignments - Speeding up readGAlignmentPairs()
Cancer
RNAseqData
GenomicFeatures
Cancer
RNAseqData
GenomicFeatures
updated 6.8 years ago by
Fong Chun Chan
▴ 320 • written 6.8 years ago by
Valerie Obenchain
★ 6.7k
14 results • Page
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Replies
Answer: Differential Transcript Usage: complex factorial design
by
Gordon Smyth
42k
edgeR does differential expression for transcripts via the catchSalmon function followed the usual edgeR pipelines as you would do for gene…
Comment: RSamtools idxstatsBam not working with remote bam file
by
mja18
▴ 30
Thanks Martin. Yes, that works.
Answer: RSamtools idxstatsBam not working with remote bam file
by
Martin Morgan
25k
Can you tell me if the following works for you? In a new R session ```{r} library(Rsamtools) setMethod(idxstatsBam, "BamFile", …
Comment: Aspli: error with gbCounts
by
achernomoretz
• 0
Hi Jeremy. We got it and we are working on the issue. Thanks for your patience. A
Comment: Aspli: error with gbCounts
by
jbono
• 0
Sorry, I forgot to respond here that I sent the file via email. Please let me know if you didn't receive it, thanks!
Votes
Answer: RSamtools idxstatsBam not working with remote bam file
Running > 100 samples per group - memory issues
R failing to load genome files from EnsDb.Hsapiens.v86
Comment: TCGA data analysis
Comment: BSGenome Forge for non-model organism
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