Showing : RNASeqData • reset
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Testing subgroup-specific interactions in DEXSeq
DEXSeq RNASeqData Transcriptomics
10 days ago • updated 6 days ago palanikumars2 • 0
3
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6
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1.1k
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Highly similar RNA-seq samples in PCA - pooling or technical duplication?
RNASeq DESeq2 DifferentialExpression RNASeqData
written 3 months ago by • 0
0
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2
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619
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After running samtools, the featureCounts command crashed.
RNASeqData Bioconductor RNASeq
updated 12 weeks ago by • 0 • written 5 months ago by • 0
3
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13
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2.4k
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Highly DE genes but small count difference within conditions
RNASeq DESeq2 RNASeqData
written 16 months ago by • 0
3
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2
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1.6k
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Biological replicates consideration in DESeq2 design formula.
DESeq2 RNASeqData RNASeq
written 8 months ago by ▴ 20
0
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1
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840
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DESeq2
org.Mmu.eg.db DESeq2 TimeCourse DMSOvsdrug RNASeqData
updated 11 months ago by ★ 5.0k • written 11 months ago by • 0
1
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1
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525
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Merging annotation with differential expression output
annotation RNASeqData
updated 11 months ago by 68k • written 11 months ago by • 0
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3
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1.2k
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Differential variance analysis - can i use deseq2
DESeq2 DifferentialExpression RNASeq RNASeqData scRNAseq
updated 12 months ago by 43k • written 12 months ago by • 0
0
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0
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423
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My DEXSeqDataSetFromSE is returning an Error, but all of my checks to seem to indicate that this error is not present
DifferentialSplicing RNASeqData DEXSeq
13 months ago cftattersfield • 0
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5
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837
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Is there a way to do DEG analysis across two batches sharing one sample only?
DESeq2 DifferentialExpression RNASeqData BatchEffect
written 13 months ago by • 0
0
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1
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557
views
Correlation between gene clusters
genomes RNASeqData
written 13 months ago by • 0
0
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2
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856
views
Mean variance curve troubleshoot filtering
limmavoom filtering edgeR RNASeqData meanvariancetrend
13 months ago gingergeiger22 • 0
2
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1
reply
805
views
Is it possible to work with DESeq2 where data is not properly matched for sex and age
DESeq2 RNASeqData
updated 13 months ago by 43k • written 14 months ago by • 0
0
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1
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774
views
combining raw counts and estimated counts
RNASeqData GEO TCGAbiolinks
updated 14 months ago by • 0 • written 14 months ago by • 0
2
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1
reply
972
views
DESeq2- merging technical vs biological replicates
DESeq2 RNASeqData
updated 14 months ago by 43k • written 15 months ago by • 0
0
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4
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1.3k
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RNA-seq: samples form different experiments, how to do DGEs?
DGEs edgeR RNASeqData
16 months ago Philippine • 0
0
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2
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1.1k
views
ESTMATE, MCPcounter, EPIC, xCell input
DESeq2 ESTIMATE RNASeqData MCPcounter
written 16 months ago by • 0
1
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1
reply
1.0k
views
WGCNA
DEGselection RNASeqData WGCNA
updated 16 months ago by ▴ 760 • written 16 months ago by • 0
1
vote
1
reply
788
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Normalization RNA-seq for multiple plates
Normalization DESeq2 RNASeqData edgeR
updated 17 months ago by ★ 5.0k • written 17 months ago by • 0
1
vote
1
reply
1.0k
views
Help with design matrix for RNA-seq data using edgeR
edgeR RNASeqData
updated 17 months ago by 53k • written 17 months ago by • 0
1
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2
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4.1k
views
How to use compareCluster in ClusterProfiler?
RNASeqData GSEA clusterProfiler
written 17 months ago by • 0
1
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2
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879
views
Questions in Regards to LFC shrinkage in DESeq2
Dseq2 RNASeqData apeglm
18 months ago Gordon • 0
0
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3
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1.1k
views
Error when trying to do different pairwise comparisons and lfcshrink than what's listed on resultsNames()
RNASeqData DESeq2 RNASeq DifferentialExpression
updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
0
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4
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1.2k
views
DE analysis in EdgeR /Can any one please help me.
RNASeqData DEGraph RNASeq edgeR DegNorm
written 19 months ago by • 0
1
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3
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2.2k
views
Combining two bulk RNA seq datasets
RNASeqData DESeq2 Normalization
20 months ago Tanvi • 0
1
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3
replies
1.1k
views
Including infectivity information to RNA-Seq analysis
RNASeqData DESeq2 RNA-Seq RNASeq
updated 20 months ago by 68k • written 20 months ago by ▴ 50
0
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1
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723
views
How to identify transcripts/genes with differential kinetics in two genotypes, using time-course RNA seq data?
RNASeqData DESeq2 DifferentialExpression
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
1
reply
816
views
ReactomeGSA for RNASeq
ReactomeGSA BatchEffect RNASeqData
updated 17 months ago by ▴ 20 • written 21 months ago by • 0
0
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1
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692
views
NEED FOR NESSASORY HELP
RNASeqData edgeR
updated 22 months ago by 53k • written 22 months ago by • 0
0
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1
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748
views
Brachypodium distachyon db
EnrichmentBrowser BrachypodiumDB RNASeqData
updated 23 months ago by 68k • written 23 months ago by • 0
3
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5
replies
1.9k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 24 months ago by 43k • written 2.0 years ago by ▴ 10
0
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0
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844
views
Differential expression analysis between different species
DEG RNASeqData DifferentialExpression SCBN RNASeq
2.0 years ago Abril • 0
1
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2
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2.7k
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How to combine a bulk and pseudobulk dataset?
DESeq2 limma RNASeq RNASeqData
written 2.8 years ago by • 0
1
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3
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1.3k
views
DESeq2 analysis on time-series RNA experiment
RNASeqData DESeq2 RNASeq
2.1 years ago island • 0
0
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2
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891
views
ConsensusClusterPlus dosesn't make an output file
ConsensusClusterPlus RNASeqData
2.1 years ago Diana • 0
0
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1
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1.3k
views
WGCNA Soft Power
Normalization DESeq2 Network RNASeqData
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
5
votes
6
replies
1.7k
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
2.1 years ago Shaimaa Gamal • 0
1
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1
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1.0k
views
Deseq2 -Model matrix not full rank error: A complex case
RNASeqData DifferentialExpression DESeq2
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by • 0
0
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2
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2.0k
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network
2.2 years ago Luca • 0
0
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1
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1.9k
views
Interaction terms in DESeq2
RNASeqData RnaSeqSampleSize DESeq2
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
1
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2
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1.3k
views
RNASeq time course analysis, missing time points for control
RNASeqData RnaSeqSampleSize RNASeq RNASeqPower
2.2 years ago drewhaydensteele • 0
1
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1
reply
1.1k
views
Differential gene expression analysis
RNASeqData RNAseq123
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by • 0
1
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2
replies
2.1k
views
Different results from blockwiseModules and blockwiseConsensusModules individual TOM
RNASeqData WGCNA consensusnetworks
2.2 years ago Levi • 0
0
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3
replies
2.8k
views
DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values in assay are negative
RNASeqData DESeq2
2.2 years ago Oenone • 0
3
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4
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1.6k
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
2.3 years ago pl23 • 0
0
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1
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836
views
DESeq2 and determining effects of treatment on a priori/candidate genes from a bulk-RNAseq experiment
RNASeqData DifferentialExpression DESeq2
updated 2.3 years ago by 43k • written 2.3 years ago by ▴ 10
2
votes
2
replies
1.2k
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
2.3 years ago Manthos • 0
0
votes
1
reply
970
views
DESeq2 interaction between one continuous variable and one categorical variable
RNASeqData DESeq2
updated 2.3 years ago by ★ 13k • written 2.3 years ago by • 0
0
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2
replies
1.1k
views
Is my data too noisy for DESeq? Should I model noise as unwanted variation?
RNASeqData DESeq2
2.3 years ago Ben ▴ 10
0
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2
replies
3.0k
views
MA plot for DESEq2 analysis
RNASeqData DESeq2
2.3 years ago RHEA • 0
153 results • Page 1 of 4
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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