ORFik: spliced 5utr regions
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@0012ceb9
Last seen 7 weeks ago
Italy

Hi, I'm currently using ORFik with the findUORFs function to search for ORFs in the 5'UTRs of human transcripts. However, I noticed that for some ORFs located in 5'UTRs with spliced exons, it returns ORFs with a stop codon at the end of one exon, rather than the actual stop codon in the following exon. I also tried reordering and joining the spliced exons and using findMapORFs, but it doesn't change anything. Can anyone help me? Thank in advance,

Luna

splicing 5utr ORFik • 188 views
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Please provide a self-contained example so people can reproduce what you are seeing. Also include the output of sessionInfo

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