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Hi, I'm currently using ORFik with the findUORFs function to search for ORFs in the 5'UTRs of human transcripts. However, I noticed that for some ORFs located in 5'UTRs with spliced exons, it returns ORFs with a stop codon at the end of one exon, rather than the actual stop codon in the following exon. I also tried reordering and joining the spliced exons and using findMapORFs, but it doesn't change anything. Can anyone help me? Thank in advance,
Luna
Please provide a self-contained example so people can reproduce what you are seeing. Also include the output of
sessionInfo