Bioconductor Splicing

Showing : splicing • reset

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276

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transcriptome splicing assembly

updated 10 months ago by James W. MacDonald 63k • written 10 months ago by Marianna ▴ 10

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543

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splicing Exon featureCounts subread DEXSeq

16 months ago NIK • 0

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505

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

2.9 years ago noahhelton98 ▴ 20

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1.7k

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edger normalization differential exon usage splicing

updated 2.9 years ago by Yunshun Chen ▴ 810 • written 2.9 years ago by oakhamwolf • 0

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880

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DEXSeq Splicing Exon Usage

3.6 years ago gunjan.dikshit • 0

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948

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ciri splicing splicesites

updated 3.7 years ago by lhddiallo • 0 • written 5.3 years ago by csijst • 0

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664

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junctionseq splicing RNAseq DEXSeq

3.8 years ago stuart ▴ 10

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1.3k

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genomicalignments splicing coverage

updated 4.0 years ago by Michael Lawrence 11k • written 6.5 years ago by rasi1983 ▴ 10

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750

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dexseq splicing sqtl qtl

updated 4.7 years ago by Alejandro Reyes ★ 1.9k • written 4.7 years ago by rtunney2 • 0

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1.5k

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deseq2 splicing

updated 5.4 years ago by Michael Love 40k • written 5.4 years ago by yannickwurm • 0

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1.3k

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DRIMSeq splicing differential isoform usage

updated 6.6 years ago by Gosia Nowicka ▴ 90 • written 6.7 years ago by kristoffer.vittingseerup ▴ 20

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2.2k

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sgseq splicing alternative splicing

updated 7.6 years ago by Leonard Goldstein ▴ 150 • written 7.6 years ago by vakul.mohanty ▴ 10

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1.6k

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microarray splicing

updated 7.7 years ago by Sonika Tyagi ▴ 20 • written 8.9 years ago by gv ▴ 40

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1.3k

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DEXSeq splicing python SAM

7.9 years ago Fiona ▴ 70

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1.8k

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SGSeq analyzeFeatures Splicing

8.8 years ago Paolo Guarnieri ▴ 20

15 results • Page 1 of 1

Recent ...

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

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