Bioconductor Splicing

Showing : splicing • reset

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880

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splicing limma edgeR

updated 13 months ago by Gordon Smyth 52k • written 13 months ago by scoops_streams_06 • 0

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781

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transcriptome splicing assembly

updated 2.5 years ago by James W. MacDonald 68k • written 2.5 years ago by Marianna ▴ 20

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1.2k

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splicing Exon featureCounts subread DEXSeq

3.0 years ago NIK • 0

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982

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.6 years ago noahhelton98 ▴ 20

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3.3k

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edger normalization differential exon usage splicing

updated 4.6 years ago by Yunshun Chen ▴ 900 • written 4.6 years ago by oakhamwolf • 0

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1.5k

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DEXSeq Splicing Exon Usage

5.3 years ago gunjan.dikshit • 0

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1.4k

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ciri splicing splicesites

updated 5.3 years ago by lhddiallo • 0 • written 7.0 years ago by csijst • 0

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1.1k

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junctionseq splicing RNAseq DEXSeq

5.4 years ago stuart ▴ 10

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1.9k

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genomicalignments splicing coverage

updated 5.6 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by rasi1983 ▴ 10

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1.1k

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dexseq splicing sqtl qtl

updated 6.3 years ago by Alejandro Reyes ★ 1.9k • written 6.3 years ago by rtunney2 • 0

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2.2k

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deseq2 splicing

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by yannickwurm • 0

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1.9k

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DRIMSeq splicing differential isoform usage

updated 8.3 years ago by Gosia Nowicka ▴ 90 • written 8.3 years ago by kristoffer.vittingseerup ▴ 20

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3.3k

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sgseq splicing alternative splicing

updated 9.2 years ago by Leonard Goldstein ▴ 260 • written 9.2 years ago by vakul.mohanty ▴ 20

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2.0k

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microarray splicing

updated 9.3 years ago by Sonika Tyagi ▴ 20 • written 10.6 years ago by gv ▴ 40

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1.7k

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DEXSeq splicing python SAM

9.6 years ago Fiona ▴ 70

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2.6k

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SGSeq analyzeFeatures Splicing

10.4 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

Recent ...

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Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Charles • 0

I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Votes

Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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