Question

A problem occurs when running the monocle2

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yuheng_yang • 0

@6329b4d3

Last seen 9 days ago

Hangzhou,PRC

Fig 1 enter image description here

Fig 2 enter image description here

Fig 3 enter image description here

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I encountered a problem when running monocle2. When I tried to open the file produced by the newCellDataSet function of the monocle package (see the Fig 1), an error occurred (see the Fig 2). I clicked on mycds in the Global Environment and found that almost all the contents of the mycds file were empty (see the Fig 3). I have tried many methods, including using upgrade_graph("mycds") (the result of this function is: Error in upgrade_graph(mycds): Not all inherits(graph, "igraph") are TRUE) (see the Fig 4). Switching to other versions of monocle did not solve the error either. My current R version is 4.5.1, the monocle package version is 2.36.0, and the igraph package version is 2.1.4. Has anyone encountered this problem before? How can I solve it?

monocle • 45 views

ADD COMMENT • link 9 days ago yuheng_yang • 0