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When doing GO analysis in the example SpliceWiz (https://www.bioconductor.org/packages/release/bioc/vignettes/SpliceWiz/inst/doc/SW_QuickStart.html#Installation), calling viewGO(ref_path) gives following error: C:/.../Reference/fst/Ontology.fst does not exist!
ref_path <- file.path(tempdir(), "Reference")
buildRef(
reference_path = ref_path,
fasta = chrZ_genome(),
gtf = chrZ_gtf(),
ontologySpecies = "Homo sapiens"
)
ontology <- viewGO(ref_path)
# Error: sep 19 10:31:57 C:\Users\htg298\AppData\Local\Temp\RtmpUfMe5m/Reference/fst/Ontology.fst does not exist!
By looking in the fst folder I can tell that many files are present but not Ontology.fst. How can I solve this problem with a build-in function looking for a seemingly non-existing file?