Using DESeq2 for age prediction
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picasa1983 • 0
@picasa1983-14806
Last seen 6 hours ago
USA

Hi,

I used DESeq2 to identify genes that vary with age. I am now wondering whether DESeq2 can also be used to predict age from gene expression or if the recommended approach would be to export the count normalized (with vst ??) and build the model with an other package ?

Thanks

Bioconductor • 37 views
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ATpoint ★ 5.0k
@atpoint-13662
Last seen 15 hours ago
Germany

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifier.

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