Using DESeq2 for age prediction
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picasa1983 • 0
@picasa1983-14806
Last seen 26 minutes ago
USA

Hi,

I used DESeq2 to identify genes that vary with age. I am now wondering whether DESeq2 can also be used to predict age from gene expression or if the recommended approach would be to export the count normalized (with vst ??) and build the model with an other package ?

Thanks

Bioconductor • 108 views
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ATpoint ★ 5.0k
@atpoint-13662
Last seen 1 day ago
Germany

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifier.

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Thanks ! Do you have any idea how to do that ?

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You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Check the StatQuest series of videos over at Youtube. Josh Starmer does a great job introducing concepts to non-stats people.

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