Highlighting only GC mismatches in the Alignment track of Gviz
0
0
Entering edit mode
s8shcahk • 0
@s8shcahk-12295
Last seen 7.8 years ago

Hello,

I have recently come across the gviz package in R and I am amazed by the things one can do with it. I find the alignment track especially useful for visualizing alignments from bam files. 

My problem lies in the fact that I have a bam file and I want to highlight only the GC positions which do not match with the  reference. Is there a way to specifically highlight the GC mismatches instead of all nucleotides which do not match?

Thanks,

Shounak

 

 

 

 

gviz alignment • 1.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 487 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6