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@jordanxanthopoulos-11527
Last seen 7.8 years ago
I am trying to pass my own custom filename for the new file which i create with the d = getData(gs,parent) command.
The problem is, when I only have one file, there is an increment 1_ in front of my custom name. I print both the length of d and my new custom name and they have the same length (1). From what I have read in the write.flowSet() page,
Alternatively, one can supply either a character scalar, in which case the prefix i_ is appended (i being an integer in seq_len(length(x))), or a character vector of the same length as the flowSet x.
I dont understand whats wrong with it, am I somewhere mistaken? I used both paste0 and paste, no difference. If I use >1 files, everything works ok (I create for each a new name)
does that mean I can install the package via the standard commands and have the problem fixed? Thanks.
It is in development branch of flowCore (1.41.7) . If you are already using Bioconductor development version (see https://www.bioconductor.org/developers/how-to/useDevel/) , you can install it through the standard "biocLite".
Otherwise, you need to install it directly from github.
devtools::install_github("RGLab/flowCore/trunk")I get a Error in stop(github_error(request)) : 404: Not Found (404) when i try to run the command you gave me. Also the link you gave is broken.
ok, you gave me the wrong command, the correct one is
devtools::install_github("RGLab/flowCore",ref="trunk")