msaPrettyPrint cannot handle long sequences?
1
0
Entering edit mode
map2085 ▴ 40
@map2085-9227
Last seen 6.6 years ago
United States

Using the msa package, I did a multiple alignment of 3 highly similar sequences, each of length ~8 kb.

 

I then tried to print them to an image using the  msaPrettyPrint function.

 

LaTeX complains about exceeding the input stack size = 5000

 
msa msaprettyprint() multiple sequence alignment • 1.5k views
ADD COMMENT •
1
Entering edit mode
map2085 ▴ 40
@map2085-9227
Last seen 6.6 years ago
United States

nevermind.  i see now the part of the vignette describing breaking the alignment into chunks, with the numbering restarting for each chunk.  my apologies.
ADD COMMENT •
0
Entering edit mode

Of course, that is exactly what I would have answered. If you have any other questions or issues, please let us know. All the best!

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 708 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6