msaPrettyPrint cannot handle long sequences?
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map2085 ▴ 40
@map2085-9227
Last seen 3.8 years ago
United States

Using the msa package, I did a multiple alignment of 3 highly similar sequences, each of length ~8 kb.

 

I then tried to print them to an image using the  msaPrettyPrint function.

 

LaTeX complains about exceeding the input stack size = 5000

 

msa msaprettyprint() multiple sequence alignment • 746 views
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map2085 ▴ 40
@map2085-9227
Last seen 3.8 years ago
United States

nevermind.  i see now the part of the vignette describing breaking the alignment into chunks, with the numbering restarting for each chunk.  my apologies.

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Of course, that is exactly what I would have answered. If you have any other questions or issues, please let us know. All the best!

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