Question: msaPrettyPrint cannot handle long sequences?
0
gravatar for map2085
2.5 years ago by
map208520
United States
map208520 wrote:

Using the msa package, I did a multiple alignment of 3 highly similar sequences, each of length ~8 kb.

 

I then tried to print them to an image using the  msaPrettyPrint function.

 

LaTeX complains about exceeding the input stack size = 5000

 

ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by map208520
Answer: msaPrettyPrint cannot handle long sequences?
1
gravatar for map2085
2.5 years ago by
map208520
United States
map208520 wrote:

nevermind.  i see now the part of the vignette describing breaking the alignment into chunks, with the numbering restarting for each chunk.  my apologies.

ADD COMMENTlink written 2.5 years ago by map208520

Of course, that is exactly what I would have answered. If you have any other questions or issues, please let us know. All the best!

ADD REPLYlink written 2.5 years ago by UBodenhofer250
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