Accessing the BigWig files from the web

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Mustafa ABUELQUMSAN • 0

@mustafa-abuelqumsan-12460

Last seen 5.0 years ago

France/Marseille

Dear Developer team of Bioconductor,

Indeed i have a bit annoying problematic through i tried to download BigWig files from the web, where here i stated my code and what is results from my running such code.

> library('rtracklayer')
> x <- import.bw('http://duffel.rail.bio/recount/DRP000366/bw/DRR000897.bw',as = 'RleList')
Error in seqinfo(ranges) : UCSC library operation failed
In addition: Warning message:
In seqinfo(ranges) :
  unable to parse last-modified string [Sun, 24 Jul 2016 16:49:39 GMT]

Thanks in advance for any suggested solution,

Mustafa.

rtracklayer • 2.2k views

ADD COMMENT • link 7.7 years ago Mustafa ABUELQUMSAN • 0

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Weird, my only guess is that it's some sort of locale issue.

ADD REPLY • link 7.7 years ago Michael Lawrence ★ 11k

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I think this may be a duplicate question.

Problem with importing bigWig file from GEO with rtracklayer?

ADD REPLY • link 7.7 years ago rreck ▴ 20

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It's not a duplicate question. It involves a linux OS instead of Windows. It's related to this thread Error through importing (project = 'SRP009615') or even to download any BigWig File.

ADD REPLY • link 7.7 years ago Leonardo Collado Torres ★ 1.1k

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