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Question: Accessing the BigWig files from the web
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gravatar for Mustafa ABUELQUMSAN
8 months ago by
France/Marseille
Mustafa ABUELQUMSAN0 wrote:

Dear  Developer team of Bioconductor,

Indeed i have a bit annoying problematic through i tried to download BigWig files from the web, where here i stated my code and what is results from my running such code.

> library('rtracklayer')
> x <- import.bw('http://duffel.rail.bio/recount/DRP000366/bw/DRR000897.bw',as = 'RleList')
Error in seqinfo(ranges) : UCSC library operation failed
In addition: Warning message:
In seqinfo(ranges) :
  unable to parse last-modified string [Sun, 24 Jul 2016 16:49:39 GMT]

Thanks in advance for any suggested solution,

Mustafa.

ADD COMMENTlink written 8 months ago by Mustafa ABUELQUMSAN0

Weird, my only guess is that it's some sort of locale issue. 

ADD REPLYlink written 8 months ago by Michael Lawrence9.8k

I think this may be a duplicate question.

Problem with importing bigWig file from GEO with rtracklayer?

ADD REPLYlink written 8 months ago by rreck0

It's not a duplicate question. It involves a linux OS instead of Windows. It's related to this thread Error through importing (project = 'SRP009615') or even to download any BigWig File.

ADD REPLYlink written 8 months ago by Leonardo Collado Torres540
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