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sarka.vorackova
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@sarkavorackova-12654
Last seen 7.3 years ago
Hi, I would like to use the minfi package, so I insltalled it and all went well except the package doRNG which fails to install. I tried to download the package and istall it from computer but it also failed. Please can anyone help? I am a new user of R and I do not have many experience. Tank you!
The downloaded binary packages are in C:\Users\Šárka\AppData\Local\Temp\RtmpUxUlzb\downloaded_packages installing the source package ‘doRNG’ trying URL 'https://cran.rstudio.com/src/contrib/doRNG_1.6.tar.gz' Content type 'application/x-gzip' length 379165 bytes (370 KB) downloaded 370 KB * installing *source* package 'doRNG' ... ** package 'doRNG' successfully unpacked and MD5 sums checked Warning in file(file, if (append) "a" else "w") : cannot open file 'C:/Users/ arka/Documents/R-3.3.3/library/doRNG/DESCRIPTION': Invalid argument Error in file(file, if (append) "a" else "w") : cannot open the connection ERROR: installing package DESCRIPTION failed for package 'doRNG' * removing 'C:/Users/Šárka/Documents/R-3.3.3/library/doRNG' The downloaded source packages are in ‘C:\Users\Šárka\AppData\Local\Temp\RtmpUxUlzb\downloaded_packages’ Old packages: 'stringi' Update all/some/none? [a/s/n]: a There is a binary version available but the source version is later: binary source needs_compilation stringi 1.1.2 1.1.3 TRUE Binaries will be installed trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/stringi_1.1.2.zip' Content type 'application/zip' length 14264524 bytes (13.6 MB) downloaded 13.6 MB package ‘stringi’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\Šárka\AppData\Local\Temp\RtmpUxUlzb\downloaded_packages Warning messages: 1: running command '"C:/Users/Šárka/Documents/R-3.3.3/bin/x64/R" CMD INSTALL -l "C:\Users\Šárka\Documents\R-3.3.3\library" C:\Users\RKA~1\AppData\Local\Temp\RtmpUxUlzb/downloaded_packages/doRNG_1.6.tar.gz' had status 1 2: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘doRNG’ had non-zero exit status > biocValid() * sessionInfo() R version 3.3.3 (2017-03-06) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=Czech_Czech Republic.1250 LC_CTYPE=Czech_Czech Republic.1250 [3] LC_MONETARY=Czech_Czech Republic.1250 LC_NUMERIC=C [5] LC_TIME=Czech_Czech Republic.1250 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.24.0 loaded via a namespace (and not attached): [1] tools_3.3.3 * Out-of-date packages Package LibPath Installed Built stringi "stringi" "C:/Users/Šárka/Documents/R-3.3.3/library" "1.1.2" "3.3.2" ReposVer Repository stringi "1.1.3" "https://cran.rstudio.com/src/contrib" update with biocLite() Error: 1 package(s) out of date > biocValid() * sessionInfo() R version 3.3.3 (2017-03-06) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=Czech_Czech Republic.1250 LC_CTYPE=Czech_Czech Republic.1250 [3] LC_MONETARY=Czech_Czech Republic.1250 LC_NUMERIC=C [5] LC_TIME=Czech_Czech Republic.1250 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.24.0 loaded via a namespace (and not attached): [1] tools_3.3.3 * Out-of-date packages Package LibPath Installed Built stringi "stringi" "C:/Users/Šárka/Documents/R-3.3.3/library" "1.1.2" "3.3.2" ReposVer Repository stringi "1.1.3" "https://cran.rstudio.com/src/contrib" update with biocLite() Error: 1 package(s) out of date > source("http://cran.r-project.org/package=doRNG") Error in source("http://cran.r-project.org/package=doRNG") : http://cran.r-project.org/package=doRNG:1:1: unexpected '<' 1: < ^ > load("C:\\Users\\Šárka\\Downloads\\doRNG_1.6.tar.gz") Error: bad restore file magic number (file may be corrupted) -- no data loaded In addition: Warning message: file ‘doRNG_1.6.tar.gz’ has magic number 'doRNG' Use of save versions prior to 2 is deprecated