Changes in GC-RMA 1.1.4 compared to 1.1.3
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@groot-philip-de-1307
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 8.4 years ago
On 22 Jun 2005, jmacdon at med.umich.edu wrote: > An actual CHANGES or NEWS file (similar to that for R itself) might > be nice, but I don't know how that stacks up in the list of > worthwhile things to do vs person-hours available to do things. Seth > Falcon would know better how easy/difficult this would be to set up. Well, quite easy to setup. It is the keeping it up to date part that is difficult. I would like to see a a NEWS-like file get updated on a monthly basis with notes on what has changed in which packages. I would be willing to create a script that extracts information from the source control system, svn, and creates some type of summary report, but this would need to be parsed by a human and put into such a NEWS file. If someone is wiling to commit to update the file for six months, I will produce the script. Any takers? Best, + seth
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@james-w-macdonald-5106
Last seen 5 hours ago
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Groot, Philip de wrote: > Hello, > > > > I just found out that a new GC-RMA library is made available (version > 1.1.4 instead of 1.1.3). As usual, no information on the changes is made > available (as far as I am aware off). Can someone please point out what > has been changed in the new package? Is it a good idea to list the > version changes of the different BioC packages somewhere? The only difference is the removal of some unnecessary variables in the computation of background using the fullmodel (default) for justGCRMA(). These changes had already been made in gcrma() and I made justGCRMA() compatible. This change was actually posted on this listserv by Seth Falcon maybe 2-3 weeks ago. https://stat.ethz.ch/pipermail/bioconductor/2005-June/009306.html An actual CHANGES or NEWS file (similar to that for R itself) might be nice, but I don't know how that stacks up in the list of worthwhile things to do vs person-hours available to do things. Seth Falcon would know better how easy/difficult this would be to set up. Best, Jim > > > > Regards, > > > > Dr. Philip de Groot > > Wageningen University > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623
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@warnes-gregory-r-1309
Last seen 8.4 years ago
Seth: There are already several svn2cl scripts (per google). I'm currently still on cvs, so I've been making good use of cvs2cl.pl to auto generate Changelogs, from which NEWS is easy to construct. -G > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of > Seth Falcon > Sent: Wednesday, June 22, 2005 2:12 PM > To: bioconductor at stat.math.ethz.ch > Subject: Re: [BioC] Changes in GC-RMA 1.1.4 compared to 1.1.3 > > > =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- > =-=-=-=-= > !!! IMPORTANT NOTICE !!! > This email was addressed to you from the Internet using a > legacy E-Mail Domain address. > > This email domain will no longer be in service on the > Internet after 15 July 2005. > > If this is legitimate business email, please inform the > sender to address all future correspondence to your > @pfizer.com address. > > The original text of this email appears below this notice. > =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- > =-=-=-=-= > > On 22 Jun 2005, jmacdon at med.umich.edu wrote: > > An actual CHANGES or NEWS file (similar to that for R itself) might > > be nice, but I don't know how that stacks up in the list of > > worthwhile things to do vs person-hours available to do things. Seth > > Falcon would know better how easy/difficult this would be to set up. > > Well, quite easy to setup. It is the keeping it up to date part that > is difficult. > > I would like to see a a NEWS-like file get updated on a > monthly basis with > notes on what has changed in which packages. > > I would be willing to create a script that extracts information from > the source control system, svn, and creates some type of summary > report, but this would need to be parsed by a human and put into such > a NEWS file. If someone is wiling to commit to update the file for > six months, I will produce the script. Any takers? > > Best, > > + seth > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > > > LEGAL NOTICE\ Unless expressly stated otherwise, this messag...{{dropped}}
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@james-w-macdonald-5106
Last seen 5 hours ago
United States
I will do it. Jim >>> Seth Falcon <sfalcon at="" fhcrc.org=""> 6/22/2005 2:12:25 PM >>> On 22 Jun 2005, jmacdon at med.umich.edu wrote: > An actual CHANGES or NEWS file (similar to that for R itself) might > be nice, but I don't know how that stacks up in the list of > worthwhile things to do vs person-hours available to do things. Seth > Falcon would know better how easy/difficult this would be to set up. Well, quite easy to setup. It is the keeping it up to date part that is difficult. I would like to see a a NEWS-like file get updated on a monthly basis with notes on what has changed in which packages. I would be willing to create a script that extracts information from the source control system, svn, and creates some type of summary report, but this would need to be parsed by a human and put into such a NEWS file. If someone is wiling to commit to update the file for six months, I will produce the script. Any takers? Best, + seth _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.
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