On 22 Jun 2005, jmacdon at med.umich.edu wrote:
> An actual CHANGES or NEWS file (similar to that for R itself) might
> be nice, but I don't know how that stacks up in the list of
> worthwhile things to do vs person-hours available to do things. Seth
> Falcon would know better how easy/difficult this would be to set up.
Well, quite easy to setup. It is the keeping it up to date part that
is difficult.
I would like to see a a NEWS-like file get updated on a monthly basis
with
notes on what has changed in which packages.
I would be willing to create a script that extracts information from
the source control system, svn, and creates some type of summary
report, but this would need to be parsed by a human and put into such
a NEWS file. If someone is wiling to commit to update the file for
six months, I will produce the script. Any takers?
Best,
+ seth
Groot, Philip de wrote:
> Hello,
>
>
>
> I just found out that a new GC-RMA library is made available
(version
> 1.1.4 instead of 1.1.3). As usual, no information on the changes is
made
> available (as far as I am aware off). Can someone please point out
what
> has been changed in the new package? Is it a good idea to list the
> version changes of the different BioC packages somewhere?
The only difference is the removal of some unnecessary variables in
the
computation of background using the fullmodel (default) for
justGCRMA().
These changes had already been made in gcrma() and I made justGCRMA()
compatible.
This change was actually posted on this listserv by Seth Falcon maybe
2-3 weeks ago.
https://stat.ethz.ch/pipermail/bioconductor/2005-June/009306.html
An actual CHANGES or NEWS file (similar to that for R itself) might be
nice, but I don't know how that stacks up in the list of worthwhile
things to do vs person-hours available to do things. Seth Falcon would
know better how easy/difficult this would be to set up.
Best,
Jim
>
>
>
> Regards,
>
>
>
> Dr. Philip de Groot
>
> Wageningen University
>
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
--
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
Seth: There are already several svn2cl scripts (per google). I'm
currently
still on cvs, so I've been making good use of cvs2cl.pl to auto
generate
Changelogs, from which NEWS is easy to construct.
-G
> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch
> [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of
> Seth Falcon
> Sent: Wednesday, June 22, 2005 2:12 PM
> To: bioconductor at stat.math.ethz.ch
> Subject: Re: [BioC] Changes in GC-RMA 1.1.4 compared to 1.1.3
>
>
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> On 22 Jun 2005, jmacdon at med.umich.edu wrote:
> > An actual CHANGES or NEWS file (similar to that for R itself)
might
> > be nice, but I don't know how that stacks up in the list of
> > worthwhile things to do vs person-hours available to do things.
Seth
> > Falcon would know better how easy/difficult this would be to set
up.
>
> Well, quite easy to setup. It is the keeping it up to date part
that
> is difficult.
>
> I would like to see a a NEWS-like file get updated on a
> monthly basis with
> notes on what has changed in which packages.
>
> I would be willing to create a script that extracts information from
> the source control system, svn, and creates some type of summary
> report, but this would need to be parsed by a human and put into
such
> a NEWS file. If someone is wiling to commit to update the file for
> six months, I will produce the script. Any takers?
>
> Best,
>
> + seth
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
>
>
LEGAL NOTICE\ Unless expressly stated otherwise, this
messag...{{dropped}}
I will do it.
Jim
>>> Seth Falcon <sfalcon at="" fhcrc.org=""> 6/22/2005 2:12:25 PM >>>
On 22 Jun 2005, jmacdon at med.umich.edu wrote:
> An actual CHANGES or NEWS file (similar to that for R itself) might
> be nice, but I don't know how that stacks up in the list of
> worthwhile things to do vs person-hours available to do things. Seth
> Falcon would know better how easy/difficult this would be to set up.
Well, quite easy to setup. It is the keeping it up to date part that
is difficult.
I would like to see a a NEWS-like file get updated on a monthly basis
with
notes on what has changed in which packages.
I would be willing to create a script that extracts information from
the source control system, svn, and creates some type of summary
report, but this would need to be parsed by a human and put into such
a NEWS file. If someone is wiling to commit to update the file for
six months, I will produce the script. Any takers?
Best,
+ seth
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