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rbronste
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@rbronste-12189
Last seen 5.0 years ago
Hi
I am using the following Centipede tutorial for ATAC foot printing and wondering if I could get some advice:
http://slowkow.com/CENTIPEDE.tutorial/#determine_if_tf_sites_are_bound
I have successfully gotten some number of sites with a posterior probability of 1 out of my total set and now have cen and fit value lists in R. So for instance out of 150K peaks I have something like 25K sites with a PostPr of 1 and I would like to pull out those specific sites in a BED file but not exactly sure the best way to do it from the fit values. If anyone has any ideas that would be very helpful, thank you.
Rob.