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Question: Centipede foot printing export
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gravatar for rbronste
20 months ago by
rbronste60
rbronste60 wrote:

Hi

I am using the following Centipede tutorial for ATAC foot printing and wondering if I could get some advice:

http://slowkow.com/CENTIPEDE.tutorial/#determine_if_tf_sites_are_bound

I have successfully gotten some number of sites with a posterior probability of 1 out of my total set and now have cen and fit value lists in R. So for instance out of 150K peaks I have something like 25K sites with a PostPr of 1 and I would like to pull out those specific sites in a BED file but not exactly sure the best way to do it from the fit values. If anyone has any ideas that would be very helpful, thank you.

Rob.

 

 

ADD COMMENTlink modified 20 months ago • written 20 months ago by rbronste60
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