Centipede foot printing export
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rbronste ▴ 60
@rbronste-12189
Last seen 22 months ago

Hi

I am using the following Centipede tutorial for ATAC foot printing and wondering if I could get some advice:

http://slowkow.com/CENTIPEDE.tutorial/#determine_if_tf_sites_are_bound

I have successfully gotten some number of sites with a posterior probability of 1 out of my total set and now have cen and fit value lists in R. So for instance out of 150K peaks I have something like 25K sites with a PostPr of 1 and I would like to pull out those specific sites in a BED file but not exactly sure the best way to do it from the fit values. If anyone has any ideas that would be very helpful, thank you.

Rob.

 

 

footprinting centipede atac-seq dnaseq • 664 views
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