Question: Centipede foot printing export
gravatar for rbronste
11 months ago by
rbronste50 wrote:


I am using the following Centipede tutorial for ATAC foot printing and wondering if I could get some advice:

I have successfully gotten some number of sites with a posterior probability of 1 out of my total set and now have cen and fit value lists in R. So for instance out of 150K peaks I have something like 25K sites with a PostPr of 1 and I would like to pull out those specific sites in a BED file but not exactly sure the best way to do it from the fit values. If anyone has any ideas that would be very helpful, thank you.




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