Hi:
I'm having an issue loading the release version of CountClust. See below for a reproducible example with error in yellow. I assume this is due to changes in the 'cowplot' CRAN package?
Thanks,
Dan
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
> biocLite("CountClust")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.3 (2017-03-06).
Installing package(s) ‘CountClust’
trying URL 'https://bioconductor.org/packages/3.4/bioc/bin/macosx/mavericks/contrib/3.3/CountClust_1.2.0.tgz'
Content type 'application/x-gzip' length 17561608 bytes (16.7 MB)
==================================================
downloaded 16.7 MB
The downloaded binary packages are in
/var/folders/xf/6sc0vfxj5dj4_0dt0r9jm_jdnrv5h3/T//RtmpoKFL63/downloaded_packages
> library(CountClust)
Loading required package: ggplot2
Error : object ‘switch_axis_position’ is not exported by 'namespace:cowplot'
Error: package or namespace load failed for ‘CountClust’
> biocValid()
[1] TRUE
> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X El Capitan 10.11.6
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggplot2_2.2.1 BiocInstaller_1.24.0
loaded via a namespace (and not attached):
[1] Rcpp_0.12.10 gtools_3.5.0 slam_0.1-40 grid_3.3.3 plyr_1.8.4 gtable_0.2.0 magrittr_1.5 scales_0.4.1 stringi_1.1.3 reshape2_1.4.2 lazyeval_0.2.0 cowplot_0.7.0 tools_3.3.3 stringr_1.2.0 munsell_0.4.3 colorspace_1.3-2 tibble_1.3.0
Try via devtools -> install_github("kkdey/Countclust") instead (they made some changes on the github version).
Yes, that does work for me. However, it is unfortunate that the main Bioconductor version does not.