which cn.mops function should I use
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@thestaroceanster-10072
Last seen 21 months ago

Currently, I am using cn.mops for detection of copy number variation in exome sequencing data. However, I encounter difficulty in choosing which function I should use. My project including tumor and corresponding control samples which point me to the referencecn.mops function while my sequencing data type(exome sequencing ) suggested that I should use exomecn.mops. I did not find any direction regarding this situation, so how should  I choose the algorithm?

cn.mops • 533 views
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@gunter-klambauer-5426
Last seen 8 months ago
Austria

referencecn.mops is the correct choice for your setting! The parameters of "exomecn.mops" are adjusted to a non-tumor copy number setting.

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