FlowViz::splom no longer works in R3.4
0
0
Entering edit mode
hefin_8 • 0
@hefin_8-12773
Last seen 7.6 years ago

Hi, my working directory contains two fcs files which I load like this:

library(flowCore)

fSet <- read.flowSet(alter.names = TRUE, pattern = "fcs")

Earlier today, in R3.1, the following would produce a scatterplot matrix:

library(flowViz)

splom(fSet[[1]])

This afternoon I updated to R3.4 and reinstalled all my packages (including the bioconductor packages), but now when I run the splom function I get this:

Error in grid.Call.graphics(C_downviewport, name$name, strict) :
  Viewport 'plot_01.panel.1.1.off.vp' was not found

Can any one help? The output of sessionInfo() is:

R version 3.4.0 (2017-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 18.1

Matrix products: default
BLAS: /usr/lib/openblas-base/libblas.so.3
LAPACK: /usr/lib/libopenblasp-r0.2.18.so

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C               LC_TIME=en_GB.UTF-8       
 [4] LC_COLLATE=en_GB.UTF-8     LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] flowViz_1.40.0            cluster_2.0.6             fda_2.4.4                
[4] Matrix_1.2-8              BH_1.62.0-1               RcppArmadillo_0.7.800.2.0
[7] ggplot2_2.2.1             lattice_0.20-35           flowCore_1.42.0          

loaded via a namespace (and not attached):
 [1] Biobase_2.36.0       jsonlite_1.4         R.utils_2.5.0        gtools_3.5.0        
 [5] shiny_1.0.3          assertthat_0.2.0     stats4_3.4.0         latticeExtra_0.6-28
 [9] flowWorkspace_3.22.0 RBGL_1.52.0          robustbase_0.92-7    quantreg_5.33       
[13] digest_0.6.12        RColorBrewer_1.1-2   colorspace_1.3-2     httpuv_1.3.3        
[17] htmltools_0.3.6      R.oo_1.21.0          plyr_1.8.4           multicool_0.1-10    
[21] pcaPP_1.9-61         XML_3.98-1.6         misc3d_0.8-4         SparseM_1.77        
[25] zlibbioc_1.22.0      xtable_1.8-2         corpcor_1.6.9        mvtnorm_1.0-6       
[29] scales_0.4.1         MatrixModels_0.4-1   flowStats_3.34.0     openCyto_1.14.0     
[33] tibble_1.3.0         BiocGenerics_0.22.0  hexbin_1.27.1        lazyeval_0.2.0      
[37] mnormt_1.5-5         mime_0.5             magrittr_1.5         IDPmisc_1.1.17      
[41] mcmc_0.9-5           ks_1.10.6            R.methodsS3_1.7.1    MASS_7.3-47         
[45] FNN_1.1              graph_1.54.0         ncdfFlow_2.22.0      tools_3.4.0         
[49] data.table_1.10.4    flowClust_3.14.0     matrixStats_0.52.2   stringr_1.2.0       
[53] MCMCpack_1.3-9       munsell_0.4.3        compiler_3.4.0       grid_3.4.0          
[57] htmlwidgets_0.8      gtable_0.2.0         codetools_0.2-15     DBI_0.6-1           
[61] rrcov_1.4-3          R6_2.2.0             gridExtra_2.2.1      knitr_1.15.1        
[65] dplyr_0.5.0          clue_0.3-53          KernSmooth_2.23-15   Rgraphviz_2.20.0    
[69] stringi_1.1.5        parallel_3.4.0       Rcpp_0.12.10         rgl_0.98.1          
[73] DEoptimR_1.0-8       coda_0.19-1 
flowviz r3.4 splom • 1.6k views
ADD COMMENT

Login before adding your answer.

Traffic: 942 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6