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hefin_8
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@hefin_8-12773
Last seen 7.7 years ago
Hi, my working directory contains two fcs files which I load like this:
library(flowCore) fSet <- read.flowSet(alter.names = TRUE, pattern = "fcs")
Earlier today, in R3.1, the following would produce a scatterplot matrix:
library(flowViz) splom(fSet[[1]])
This afternoon I updated to R3.4 and reinstalled all my packages (including the bioconductor packages), but now when I run the splom function I get this:
Error in grid.Call.graphics(C_downviewport, name$name, strict) : Viewport 'plot_01.panel.1.1.off.vp' was not found
Can any one help? The output of sessionInfo() is:
R version 3.4.0 (2017-04-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Linux Mint 18.1 Matrix products: default BLAS: /usr/lib/openblas-base/libblas.so.3 LAPACK: /usr/lib/libopenblasp-r0.2.18.so locale: [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_GB.UTF-8 [4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8 [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] splines stats graphics grDevices utils datasets methods base other attached packages: [1] flowViz_1.40.0 cluster_2.0.6 fda_2.4.4 [4] Matrix_1.2-8 BH_1.62.0-1 RcppArmadillo_0.7.800.2.0 [7] ggplot2_2.2.1 lattice_0.20-35 flowCore_1.42.0 loaded via a namespace (and not attached): [1] Biobase_2.36.0 jsonlite_1.4 R.utils_2.5.0 gtools_3.5.0 [5] shiny_1.0.3 assertthat_0.2.0 stats4_3.4.0 latticeExtra_0.6-28 [9] flowWorkspace_3.22.0 RBGL_1.52.0 robustbase_0.92-7 quantreg_5.33 [13] digest_0.6.12 RColorBrewer_1.1-2 colorspace_1.3-2 httpuv_1.3.3 [17] htmltools_0.3.6 R.oo_1.21.0 plyr_1.8.4 multicool_0.1-10 [21] pcaPP_1.9-61 XML_3.98-1.6 misc3d_0.8-4 SparseM_1.77 [25] zlibbioc_1.22.0 xtable_1.8-2 corpcor_1.6.9 mvtnorm_1.0-6 [29] scales_0.4.1 MatrixModels_0.4-1 flowStats_3.34.0 openCyto_1.14.0 [33] tibble_1.3.0 BiocGenerics_0.22.0 hexbin_1.27.1 lazyeval_0.2.0 [37] mnormt_1.5-5 mime_0.5 magrittr_1.5 IDPmisc_1.1.17 [41] mcmc_0.9-5 ks_1.10.6 R.methodsS3_1.7.1 MASS_7.3-47 [45] FNN_1.1 graph_1.54.0 ncdfFlow_2.22.0 tools_3.4.0 [49] data.table_1.10.4 flowClust_3.14.0 matrixStats_0.52.2 stringr_1.2.0 [53] MCMCpack_1.3-9 munsell_0.4.3 compiler_3.4.0 grid_3.4.0 [57] htmlwidgets_0.8 gtable_0.2.0 codetools_0.2-15 DBI_0.6-1 [61] rrcov_1.4-3 R6_2.2.0 gridExtra_2.2.1 knitr_1.15.1 [65] dplyr_0.5.0 clue_0.3-53 KernSmooth_2.23-15 Rgraphviz_2.20.0 [69] stringi_1.1.5 parallel_3.4.0 Rcpp_0.12.10 rgl_0.98.1 [73] DEoptimR_1.0-8 coda_0.19-1