Question: FlowViz::splom no longer works in R3.4
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gravatar for hefin_8
2.1 years ago by
hefin_80
hefin_80 wrote:

Hi, my working directory contains two fcs files which I load like this:

library(flowCore)

fSet <- read.flowSet(alter.names = TRUE, pattern = "fcs")

Earlier today, in R3.1, the following would produce a scatterplot matrix:

library(flowViz)

splom(fSet[[1]])

This afternoon I updated to R3.4 and reinstalled all my packages (including the bioconductor packages), but now when I run the splom function I get this:

Error in grid.Call.graphics(C_downviewport, name$name, strict) :
  Viewport 'plot_01.panel.1.1.off.vp' was not found

Can any one help? The output of sessionInfo() is:

R version 3.4.0 (2017-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 18.1

Matrix products: default
BLAS: /usr/lib/openblas-base/libblas.so.3
LAPACK: /usr/lib/libopenblasp-r0.2.18.so

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C               LC_TIME=en_GB.UTF-8       
 [4] LC_COLLATE=en_GB.UTF-8     LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] flowViz_1.40.0            cluster_2.0.6             fda_2.4.4                
[4] Matrix_1.2-8              BH_1.62.0-1               RcppArmadillo_0.7.800.2.0
[7] ggplot2_2.2.1             lattice_0.20-35           flowCore_1.42.0          

loaded via a namespace (and not attached):
 [1] Biobase_2.36.0       jsonlite_1.4         R.utils_2.5.0        gtools_3.5.0        
 [5] shiny_1.0.3          assertthat_0.2.0     stats4_3.4.0         latticeExtra_0.6-28
 [9] flowWorkspace_3.22.0 RBGL_1.52.0          robustbase_0.92-7    quantreg_5.33       
[13] digest_0.6.12        RColorBrewer_1.1-2   colorspace_1.3-2     httpuv_1.3.3        
[17] htmltools_0.3.6      R.oo_1.21.0          plyr_1.8.4           multicool_0.1-10    
[21] pcaPP_1.9-61         XML_3.98-1.6         misc3d_0.8-4         SparseM_1.77        
[25] zlibbioc_1.22.0      xtable_1.8-2         corpcor_1.6.9        mvtnorm_1.0-6       
[29] scales_0.4.1         MatrixModels_0.4-1   flowStats_3.34.0     openCyto_1.14.0     
[33] tibble_1.3.0         BiocGenerics_0.22.0  hexbin_1.27.1        lazyeval_0.2.0      
[37] mnormt_1.5-5         mime_0.5             magrittr_1.5         IDPmisc_1.1.17      
[41] mcmc_0.9-5           ks_1.10.6            R.methodsS3_1.7.1    MASS_7.3-47         
[45] FNN_1.1              graph_1.54.0         ncdfFlow_2.22.0      tools_3.4.0         
[49] data.table_1.10.4    flowClust_3.14.0     matrixStats_0.52.2   stringr_1.2.0       
[53] MCMCpack_1.3-9       munsell_0.4.3        compiler_3.4.0       grid_3.4.0          
[57] htmlwidgets_0.8      gtable_0.2.0         codetools_0.2-15     DBI_0.6-1           
[61] rrcov_1.4-3          R6_2.2.0             gridExtra_2.2.1      knitr_1.15.1        
[65] dplyr_0.5.0          clue_0.3-53          KernSmooth_2.23-15   Rgraphviz_2.20.0    
[69] stringi_1.1.5        parallel_3.4.0       Rcpp_0.12.10         rgl_0.98.1          
[73] DEoptimR_1.0-8       coda_0.19-1 
flowviz r3.4 splom • 525 views
ADD COMMENTlink written 2.1 years ago by hefin_80
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