Hi,
I am experimenting with the use of size factors in DESeq2 (i.e. the s_ij factors). Essentially, I would like to show that the use of gene-specific s_ij factors, derived from external data, improves the model's fit.
Is there a simple way to derive an AIC-like measure from my DESeq2 object for this purpose? Or perhaps there is a better method to do this?
Apologies if this has been answered before - I couldn't find anything appropriate.
Thanks,
Jonathan
Thanks - I will look at the total deviance.